Detailed information NTG0496585

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: IM712_RS06270
• Genome accession: NZ_CP063768
• Coordinates: 1258625..1259770 (-)
• Length: 381 a.a.
• NCBI ID: WP_077722992.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain KMU01
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 1253625..1264770

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IM712_RS06230	speE	1253918..1254748 (+)	831	WP_003151052.1	spermidine synthase	-
IM712_RS06235	speB	1254808..1255680 (+)	873	WP_003151054.1	agmatinase	-
IM712_RS06240	-	1255850..1256068 (+)	219	WP_003151056.1	helix-turn-helix transcriptional regulator	-
IM712_RS06245	-	1256659..1257171 (-)	513	WP_077722993.1	stage II sporulation protein M	-
IM712_RS06250	-	1257215..1257496 (-)	282	WP_014306021.1	hypothetical protein	-
IM712_RS06255	-	1257903..1258106 (-)	204	WP_069473623.1	hypothetical protein	-
IM712_RS06260	-	1258120..1258323 (-)	204	WP_003151064.1	helix-turn-helix transcriptional regulator	-
IM712_RS06265	phrF	1258522..1258641 (-)	120	WP_069473622.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
IM712_RS06270	rapF	1258625..1259770 (-)	1146	WP_077722992.1	tetratricopeptide repeat protein	Regulator
IM712_RS06275	-	1260001..1261356 (+)	1356	WP_077722991.1	YncE family protein	-
IM712_RS06280	-	1261396..1262772 (+)	1377	WP_077722990.1	YncE family protein	-
IM712_RS06285	-	1262779..1263291 (-)	513	Protein_1188	bacteriocin biosynthesis protein AlbG	-
IM712_RS06290	-	1263445..1263873 (+)	429	WP_032869448.1	DUF1934 domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45541.70 Da
• Isoelectric Point: 4.6057

>NTDB_id=496585 IM712_RS06270 WP_077722992.1 1258625..1259770(-) (rapF) [Bacillus velezensis strain KMU01]
MASVLSSSAIGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQGNYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAEEAEDSLYIVEYEFLESLYVGEPDEEAI
MECFDFLRDKMMYADLEDFALDVAKYYHERENFEKAAAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=496585 IM712_RS06270 WP_077722992.1 1258625..1259770(-) (rapF) [Bacillus velezensis strain KMU01]
GTGGCGAGTGTTTTATCGTCTTCAGCGATTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTATTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGCCTGGAAGATGACCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTGGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAGCAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAAGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGGAAATTACAAACCA
GCCATTGATTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATAGTCGAATATGAATTTTTAGAATCTTTGTATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAAATGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAGAATTTCGAGAAGGCTGCTGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (189-253)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	78.74	100	0.787
rapC	Bacillus subtilis subsp. subtilis str. 168	56.842	99.738	0.567