Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   BACVE_RS11160 Genome accession   NZ_CP063687
Coordinates   2215769..2216458 (+) Length   229 a.a.
NCBI ID   WP_199803302.1    Uniprot ID   -
Organism   Bacillus velezensis strain NST6     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2210769..2221458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BACVE_RS11135 (BACVE_002249) degS 2211053..2212216 (+) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  BACVE_RS11140 (BACVE_002250) degU 2212293..2212982 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BACVE_RS11145 (BACVE_002251) - 2213080..2213928 (+) 849 WP_003151387.1 DegV family protein -
  BACVE_RS11150 (BACVE_002252) comFA 2214036..2215421 (+) 1386 WP_063636495.1 DEAD/DEAH box helicase Machinery gene
  BACVE_RS11155 (BACVE_002253) - 2215479..2215763 (+) 285 WP_022553866.1 competence protein ComFB -
  BACVE_RS11160 (BACVE_002254) comFC 2215769..2216458 (+) 690 WP_199803302.1 phosphoribosyltransferase family protein Machinery gene
  BACVE_RS11165 (BACVE_002255) - 2216532..2216951 (+) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  BACVE_RS11170 (BACVE_002256) flgM 2217021..2217287 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  BACVE_RS11175 (BACVE_002257) - 2217302..2217784 (+) 483 WP_022553865.1 flagellar protein FlgN -
  BACVE_RS11180 (BACVE_002258) flgK 2217800..2219317 (+) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  BACVE_RS11185 (BACVE_002259) flgL 2219329..2220246 (+) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  BACVE_RS11190 (BACVE_002260) - 2220337..2220906 (+) 570 WP_017418818.1 DUF6470 family protein -
  BACVE_RS11195 (BACVE_002261) fliW 2220936..2221367 (+) 432 WP_007407475.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25332.01 Da        Isoelectric Point: 8.2927

>NTDB_id=496286 BACVE_RS11160 WP_199803302.1 2215769..2216458(+) (comFC) [Bacillus velezensis strain NST6]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPRESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=496286 BACVE_RS11160 WP_199803302.1 2215769..2216458(+) (comFC) [Bacillus velezensis strain NST6]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGTCCCGTATGCAGTATATGCGGGAGGCCTCGGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594