Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   BACVE_RS11150 Genome accession   NZ_CP063687
Coordinates   2214036..2215421 (+) Length   461 a.a.
NCBI ID   WP_063636495.1    Uniprot ID   -
Organism   Bacillus velezensis strain NST6     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2209036..2220421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BACVE_RS11130 (BACVE_002248) - 2210183..2210830 (-) 648 WP_060657503.1 YigZ family protein -
  BACVE_RS11135 (BACVE_002249) degS 2211053..2212216 (+) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  BACVE_RS11140 (BACVE_002250) degU 2212293..2212982 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BACVE_RS11145 (BACVE_002251) - 2213080..2213928 (+) 849 WP_003151387.1 DegV family protein -
  BACVE_RS11150 (BACVE_002252) comFA 2214036..2215421 (+) 1386 WP_063636495.1 DEAD/DEAH box helicase Machinery gene
  BACVE_RS11155 (BACVE_002253) - 2215479..2215763 (+) 285 WP_022553866.1 competence protein ComFB -
  BACVE_RS11160 (BACVE_002254) comFC 2215769..2216458 (+) 690 WP_199803302.1 phosphoribosyltransferase family protein Machinery gene
  BACVE_RS11165 (BACVE_002255) - 2216532..2216951 (+) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  BACVE_RS11170 (BACVE_002256) flgM 2217021..2217287 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  BACVE_RS11175 (BACVE_002257) - 2217302..2217784 (+) 483 WP_022553865.1 flagellar protein FlgN -
  BACVE_RS11180 (BACVE_002258) flgK 2217800..2219317 (+) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  BACVE_RS11185 (BACVE_002259) flgL 2219329..2220246 (+) 918 WP_007407477.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52663.08 Da        Isoelectric Point: 10.2804

>NTDB_id=496285 BACVE_RS11150 WP_063636495.1 2214036..2215421(+) (comFA) [Bacillus velezensis strain NST6]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFTEKEYITAEPSIIRRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQTPENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLNKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQLQLPVFLFVPSVHVLKKTTDYFRKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=496285 BACVE_RS11150 WP_063636495.1 2214036..2215421(+) (comFA) [Bacillus velezensis strain NST6]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
CTCAGACCAGCGTATCAAGCGTTTTACAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAACCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCTGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTTTTAGTATGGGCGGTTTGCGGATCAGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTTTGTGTCGCAACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAATAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCGACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATTACAGCTGCCGGTTTTCTTATTCGTCCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCGGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGATTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(330-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.391

99.783

0.623