Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   IM698_RS14750 Genome accession   NZ_CP063682
Coordinates   3310525..3311157 (-) Length   210 a.a.
NCBI ID   WP_004729651.1    Uniprot ID   A0AAN0LME0
Organism   Vibrio splendidus strain ED144     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3305525..3316157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM698_RS14735 (IM698_14715) astA 3306808..3307827 (+) 1020 WP_009848917.1 arginine N-succinyltransferase -
  IM698_RS14740 (IM698_14720) astD 3307867..3309336 (+) 1470 WP_260809865.1 succinylglutamate-semialdehyde dehydrogenase -
  IM698_RS14745 (IM698_14725) - 3309549..3310340 (+) 792 WP_248373083.1 DUF1338 domain-containing protein -
  IM698_RS14750 (IM698_14730) crp 3310525..3311157 (-) 633 WP_004729651.1 cAMP-activated global transcriptional regulator CRP Regulator
  IM698_RS14755 (IM698_14735) - 3311397..3312266 (-) 870 WP_010435210.1 phosphoribulokinase -
  IM698_RS14760 (IM698_14740) - 3312344..3312556 (-) 213 WP_010435208.1 YheU family protein -
  IM698_RS14765 (IM698_14745) - 3312652..3313644 (-) 993 WP_260809866.1 hydrolase -
  IM698_RS14770 (IM698_14750) - 3313917..3314387 (-) 471 WP_248373079.1 TIGR02444 family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23623.39 Da        Isoelectric Point: 7.4009

>NTDB_id=496239 IM698_RS14750 WP_004729651.1 3310525..3311157(-) (crp) [Vibrio splendidus strain ED144]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMANRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=496239 IM698_RS14750 WP_004729651.1 3310525..3311157(-) (crp) [Vibrio splendidus strain ED144]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCTTCAAA
AAGTACTTTGATTCATGCTGGTGAAAAGGCAGAAACCTTGTACTACATCGTTAAAGGTTCTGTGGCAGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATTCTTTCTTACCTAAACCAAGGCGACTTCATCGGTGAGCTTGGCTTATTCGAAGAAGAC
CAAGAGCGTACTGCTTGGGTTCGTGCTAAATCTCCTTGTGAAGTAGCTGAGATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTGAACCCGGATATCCTAATGCGCCTTTCAGCGCAAATGGCAAACCGTCTACAAGTAACTAGCCAAAAGGTTGGTG
ACTTAGCATTCCTTGACGTAACAGGTCGTATCGCTCAAACGCTACTAAACCTAGCGAAACAGCCAGATGCAATGACTCAC
CCTGACGGCATGCAAATCAAGATCACTCGTCAAGAGATTGGCCAAATCGTTGGTTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATTTCTGCACACGGTAAAACTATCGTGGTATACGGCACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467