Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   IQE94_RS04260 Genome accession   NZ_CP063659
Coordinates   912994..913842 (-) Length   282 a.a.
NCBI ID   WP_212716365.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 7339     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 907994..918842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQE94_RS04235 (IQE94_04210) - 908053..908805 (+) 753 WP_212716358.1 FkbM family methyltransferase -
  IQE94_RS04240 (IQE94_04215) - 908825..909649 (+) 825 WP_212716360.1 FkbM family methyltransferase -
  IQE94_RS04245 (IQE94_04220) pilQ 909697..911628 (-) 1932 WP_223342771.1 type IV pilus secretin PilQ Machinery gene
  IQE94_RS04250 pilQ 911562..912041 (-) 480 WP_223342772.1 hypothetical protein Machinery gene
  IQE94_RS04255 (IQE94_04225) pilO 912137..912946 (-) 810 WP_212716363.1 pilus assembly protein Machinery gene
  IQE94_RS04260 (IQE94_04230) pilN 912994..913842 (-) 849 WP_212716365.1 PilN domain-containing protein Machinery gene
  IQE94_RS04265 (IQE94_04235) pilM 913926..915029 (-) 1104 WP_194013674.1 type IV pilus biogenesis protein PilM Machinery gene
  IQE94_RS04270 (IQE94_04240) - 915215..915655 (-) 441 WP_194013672.1 hypothetical protein -
  IQE94_RS04275 (IQE94_04245) - 915685..916449 (-) 765 WP_212716367.1 iron uptake porin -
  IQE94_RS04280 (IQE94_04250) - 916700..917440 (-) 741 WP_223342773.1 WecB/TagA/CpsF family glycosyltransferase -

Sequence

Protein


Download         Length: 282 a.a.        Molecular weight: 30104.12 Da        Isoelectric Point: 4.1313

>NTDB_id=496184 IQE94_RS04260 WP_212716365.1 912994..913842(-) (pilN) [Synechocystis sp. PCC 7339]
MYSLDVNFLKDRNSDVVRSTQTTSITLAGDDLQKQMPLYIGAGVMVLLPALAGLGVLLINWQKGVAQTNIQQLETELTQL
QGEQQKIQEVQAKTAAAHQDADGLIAVFNQIKPWSALLQEITNQLPQEVQLQSIQQEGNLVTLSGFAGNYGALNDFLLTL
QSSKFLQANKTQLMTANAAALPITGEGTTAQTGGTEELEADQGTSTVLIPAGVSYTIQTEITNTPDKDLMTALIKNGAAG
LVARFKFLELKGVLDRPADVPDVPPPPIVEPTGDAPPPETSN

Nucleotide


Download         Length: 849 bp        

>NTDB_id=496184 IQE94_RS04260 WP_212716365.1 912994..913842(-) (pilN) [Synechocystis sp. PCC 7339]
ATGTATAGCCTAGACGTCAACTTTCTCAAGGACCGCAACTCTGACGTTGTTCGGTCCACCCAAACCACCAGCATTACCCT
AGCGGGAGACGATCTACAGAAACAAATGCCGCTTTACATTGGGGCGGGGGTGATGGTACTCTTGCCTGCTTTGGCTGGGT
TGGGGGTGCTGCTGATCAATTGGCAAAAGGGCGTTGCCCAGACCAATATTCAACAGTTAGAAACGGAGTTGACCCAACTA
CAGGGGGAACAGCAAAAAATCCAGGAAGTGCAAGCAAAAACAGCGGCGGCTCACCAGGATGCGGACGGCTTAATCGCTGT
GTTTAATCAAATTAAGCCTTGGTCGGCTTTATTGCAGGAAATTACTAATCAGTTACCCCAGGAAGTACAGTTACAAAGTA
TCCAACAGGAAGGAAACTTGGTTACCCTGTCCGGATTTGCCGGGAACTACGGTGCTCTAAATGATTTCCTCCTCACTTTG
CAGAGTTCAAAGTTTTTACAGGCTAATAAAACTCAGTTAATGACGGCCAATGCGGCAGCTTTACCCATTACTGGGGAAGG
CACAACAGCCCAAACTGGTGGAACAGAGGAACTAGAAGCGGATCAGGGCACTTCTACGGTTTTAATTCCAGCGGGGGTGA
GCTACACCATCCAGACTGAGATCACTAATACCCCAGATAAGGATCTGATGACAGCATTAATTAAAAATGGGGCGGCGGGT
TTAGTGGCCCGATTTAAATTTTTAGAACTCAAGGGGGTATTGGATCGGCCAGCGGATGTACCGGATGTTCCCCCTCCCCC
GATTGTGGAACCAACAGGGGATGCTCCTCCACCAGAGACCTCAAACTAG

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(116-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Synechocystis sp. PCC 6803

87.726

98.227

0.862