Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   IQE94_RS04245 Genome accession   NZ_CP063659
Coordinates   909697..911628 (-) Length   643 a.a.
NCBI ID   WP_223342771.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 7339     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 904697..916628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQE94_RS04220 (IQE94_04195) ndhC 905204..905566 (-) 363 WP_190596439.1 photosynthetic/respiratory NAD(P)H-quinone oxidoreductase subunit C -
  IQE94_RS04225 (IQE94_04200) thrC 905851..906999 (+) 1149 WP_212716353.1 threonine synthase -
  IQE94_RS04230 (IQE94_04205) tilS 907032..908018 (-) 987 WP_223342770.1 tRNA lysidine(34) synthetase TilS -
  IQE94_RS04235 (IQE94_04210) - 908053..908805 (+) 753 WP_212716358.1 FkbM family methyltransferase -
  IQE94_RS04240 (IQE94_04215) - 908825..909649 (+) 825 WP_212716360.1 FkbM family methyltransferase -
  IQE94_RS04245 (IQE94_04220) pilQ 909697..911628 (-) 1932 WP_223342771.1 type IV pilus secretin PilQ Machinery gene
  IQE94_RS04250 pilQ 911562..912041 (-) 480 WP_223342772.1 hypothetical protein Machinery gene
  IQE94_RS04255 (IQE94_04225) pilO 912137..912946 (-) 810 WP_212716363.1 pilus assembly protein Machinery gene
  IQE94_RS04260 (IQE94_04230) pilN 912994..913842 (-) 849 WP_212716365.1 PilN domain-containing protein Machinery gene
  IQE94_RS04265 (IQE94_04235) pilM 913926..915029 (-) 1104 WP_194013674.1 type IV pilus biogenesis protein PilM Machinery gene
  IQE94_RS04270 (IQE94_04240) - 915215..915655 (-) 441 WP_194013672.1 hypothetical protein -
  IQE94_RS04275 (IQE94_04245) - 915685..916449 (-) 765 WP_212716367.1 iron uptake porin -

Sequence

Protein


Download         Length: 643 a.a.        Molecular weight: 68998.99 Da        Isoelectric Point: 4.3743

>NTDB_id=496181 IQE94_RS04245 WP_223342771.1 909697..911628(-) (pilQ) [Synechocystis sp. PCC 7339]
MFPNPEIIIQQQGGAPQGGARVGNPNILSPAVPVAPVRSRAVPPPVGDLAISNINASFDMIDLGQRGQVNVPSLVLREAP
AREVLAVLTRYAGMNLIFTDNQSNEGTPTPGTPPGGQDAPPPNQSTITLDIQNESVQDVFNYVLMASGLKASRRGNTIFA
GASLLPSARNIITRTIRLNQASAESVASTLASQGAEVNILFEGQEDVQLAENAPPRVIKQPPTLVPLTVQKPANDSSVLI
LEGLVVSTDPRLNTVTLVGEPRNVELASSMITQMDARRRQVAVNVKIIDINLNNIQDYDSSFSFGIGDSFFVQDSGRGIM
RFGDTAPVQEIDINNPLGRVTNPPAIVNPFFNGPGEDVFFDLSRLTNIETPLGTGTIPLNFFTSGSGAISNNPLFTGVTD
FPIAEVDQDGILTVTYPEFGLPSFYQYPKKFQAQIDAQIRSGNAKILTDPTLIVQEGEAAQVKLTESVIASVDTQVDTQG
NTAVRTITPVLEDVGLTLNVIVDRIDDNGFITLRVNPIVASPAGTERFDSGAGAINEITLINKRELTSGVVRLRDDQTFI
LSGIISELQRSTTSKVPILGDLPVIGALFRQSTDTTDRSEVIILMTPKIIHDSTEAQFGFRYNPDAATAEFLRQKGFPVQ
AQP

Nucleotide


Download         Length: 1932 bp        

>NTDB_id=496181 IQE94_RS04245 WP_223342771.1 909697..911628(-) (pilQ) [Synechocystis sp. PCC 7339]
ATGTTTCCCAACCCGGAAATTATTATTCAACAACAGGGTGGTGCTCCCCAGGGAGGAGCGAGGGTAGGTAATCCCAATAT
TTTGTCCCCCGCTGTGCCAGTGGCTCCCGTCCGTTCCAGGGCAGTGCCACCACCGGTGGGGGATTTGGCTATTTCCAATA
TCAACGCTTCCTTCGACATGATTGATCTTGGTCAAAGGGGCCAGGTTAACGTGCCAAGTTTAGTGCTAAGGGAAGCCCCC
GCCAGGGAAGTGCTGGCAGTGTTGACTCGTTATGCCGGCATGAACTTGATTTTCACTGATAATCAAAGCAATGAAGGGAC
TCCCACTCCCGGCACTCCTCCCGGTGGACAGGATGCTCCCCCGCCCAATCAGTCAACTATCACCTTAGATATTCAAAATG
AGAGCGTTCAGGATGTCTTTAACTATGTTCTGATGGCATCGGGGCTAAAGGCCAGTCGTCGGGGTAATACCATTTTCGCG
GGTGCTAGTCTACTGCCTTCTGCCCGGAATATTATCACCCGCACCATCCGATTGAACCAGGCTAGCGCTGAATCCGTAGC
TAGTACTTTAGCTTCCCAAGGGGCTGAAGTAAATATTCTCTTTGAAGGCCAAGAAGATGTTCAACTCGCGGAGAACGCTC
CACCAAGAGTAATCAAACAGCCCCCCACCCTAGTCCCTTTAACTGTTCAAAAACCAGCCAACGATTCTTCAGTTTTAATT
CTGGAAGGATTAGTAGTTAGTACAGACCCCCGTTTAAATACAGTAACTTTGGTGGGTGAACCCCGTAATGTGGAATTGGC
TAGCTCCATGATCACGCAGATGGATGCTCGCCGTCGTCAAGTAGCAGTTAACGTCAAGATTATTGACATCAACCTTAATA
ATATTCAGGATTATGACAGTAGCTTTTCCTTTGGTATAGGGGATAGTTTCTTTGTTCAAGACAGCGGTAGGGGGATAATG
CGTTTTGGTGATACTGCTCCGGTTCAGGAAATTGACATTAACAATCCGTTAGGGCGAGTTACTAATCCCCCTGCCATCGT
CAATCCATTTTTTAATGGTCCCGGTGAAGATGTTTTCTTTGACCTTAGTAGACTAACCAATATTGAAACTCCCCTTGGTA
CAGGGACAATTCCCCTTAATTTCTTCACATCAGGATCGGGAGCTATTTCCAATAATCCACTATTCACTGGGGTTACCGAC
TTTCCAATTGCGGAGGTTGATCAAGATGGCATTTTAACAGTTACTTATCCCGAGTTTGGTCTGCCATCTTTCTATCAGTA
TCCGAAGAAATTCCAGGCACAAATTGATGCCCAGATACGCAGTGGTAATGCCAAGATCCTCACTGATCCAACTCTGATTG
TTCAGGAAGGGGAAGCGGCCCAAGTTAAACTAACGGAATCCGTCATTGCTAGTGTCGATACCCAGGTTGATACCCAAGGA
AACACCGCCGTCAGGACCATTACGCCAGTTTTGGAAGATGTTGGGCTAACGCTAAATGTCATCGTTGACCGAATTGATGA
CAATGGCTTTATTACGTTGCGGGTTAATCCAATAGTTGCATCTCCGGCTGGCACAGAAAGATTTGATAGTGGTGCTGGCG
CCATCAACGAAATCACACTAATAAACAAAAGGGAACTTACTTCCGGTGTAGTTCGGCTGAGGGATGATCAGACATTCATT
CTATCTGGCATTATTTCGGAACTTCAACGTTCTACCACAAGTAAAGTTCCAATTCTGGGAGATTTACCGGTGATTGGGGC
ATTGTTTCGGCAGTCCACAGACACCACGGACCGTTCGGAGGTTATTATTCTCATGACTCCCAAAATTATTCATGACAGTA
CGGAAGCTCAATTTGGTTTCCGCTATAATCCCGATGCGGCGACAGCGGAATTTTTGCGACAGAAAGGATTCCCGGTTCAA
GCTCAACCGTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(173-280)

Bacterial type II and III secretion system protein (Secretin)

(439-611)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Synechocystis sp. PCC 6803

93.798

100

0.941