Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   IQE94_RS04265 Genome accession   NZ_CP063659
Coordinates   913926..915029 (-) Length   367 a.a.
NCBI ID   WP_194013674.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 7339     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 908926..920029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQE94_RS04245 (IQE94_04220) pilQ 909697..911628 (-) 1932 WP_223342771.1 type IV pilus secretin PilQ Machinery gene
  IQE94_RS04250 pilQ 911562..912041 (-) 480 WP_223342772.1 hypothetical protein Machinery gene
  IQE94_RS04255 (IQE94_04225) pilO 912137..912946 (-) 810 WP_212716363.1 pilus assembly protein Machinery gene
  IQE94_RS04260 (IQE94_04230) pilN 912994..913842 (-) 849 WP_212716365.1 PilN domain-containing protein Machinery gene
  IQE94_RS04265 (IQE94_04235) pilM 913926..915029 (-) 1104 WP_194013674.1 type IV pilus biogenesis protein PilM Machinery gene
  IQE94_RS04270 (IQE94_04240) - 915215..915655 (-) 441 WP_194013672.1 hypothetical protein -
  IQE94_RS04275 (IQE94_04245) - 915685..916449 (-) 765 WP_212716367.1 iron uptake porin -
  IQE94_RS04280 (IQE94_04250) - 916700..917440 (-) 741 WP_223342773.1 WecB/TagA/CpsF family glycosyltransferase -
  IQE94_RS04285 (IQE94_04255) - 917572..919161 (-) 1590 WP_194013668.1 TolC family protein -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 40928.62 Da        Isoelectric Point: 4.2649

>NTDB_id=496185 IQE94_RS04265 WP_194013674.1 913926..915029(-) (pilM) [Synechocystis sp. PCC 7339]
MFSRLTSLFSRKSSGVGLEITPERVNVAQLTSQGQSYKLRKFGHASIPEGIFEEGKIVDSPALAEIIQELLSEHSINTKQ
VATAVPMREAIIRMLPVPAELDENELRDMVLNHEAALYLPYPREEVDLDYQKLGLFEDEDGIEKVQVLLVATRREVTDSY
LDTFQQAGLQVDVLEINSFALIRTIREQLRQFGSREAAVLVDIEFDSTEIAIIVDGVPQFSRTVPIGTYQMQNALSRAMN
LPPSRNPEILQGMTIPVTQFDTMSTQGTAVNPGMNALMRVMGELTDELRRSINFYLNQSEELELVQLLLAGPGGGLIQLD
EYFTQRLSIPTVRVDPFEALAIDTDQNFSDVERPSLATVLGLGIREA

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=496185 IQE94_RS04265 WP_194013674.1 913926..915029(-) (pilM) [Synechocystis sp. PCC 7339]
ATGTTTAGCCGTCTCACTAGCTTATTTAGCCGTAAATCCTCCGGGGTAGGGCTAGAAATCACCCCCGAAAGGGTTAATGT
TGCCCAACTTACTTCCCAGGGTCAGAGCTATAAACTGAGGAAGTTTGGTCACGCTTCCATTCCGGAGGGGATTTTTGAGG
AAGGGAAGATCGTTGATTCTCCAGCCTTGGCGGAAATTATTCAGGAACTGCTGAGCGAGCATAGTATTAACACCAAGCAG
GTGGCCACGGCGGTGCCCATGCGGGAGGCTATCATTCGTATGCTGCCGGTGCCGGCGGAGTTGGACGAAAACGAGTTGCG
GGACATGGTGCTGAACCACGAAGCGGCCCTGTATTTGCCCTACCCCCGGGAAGAAGTGGATTTGGATTACCAAAAACTAG
GCTTGTTCGAGGATGAAGACGGCATCGAAAAGGTGCAGGTGTTGTTGGTGGCCACCCGTCGGGAGGTGACCGATTCCTAT
CTAGATACTTTTCAGCAGGCGGGGCTCCAGGTGGACGTGCTGGAAATCAATAGTTTTGCCCTAATTAGAACCATTCGGGA
ACAGTTGCGGCAGTTTGGTTCTCGGGAGGCGGCGGTTTTGGTGGATATTGAGTTCGACAGCACGGAAATTGCCATCATTG
TGGACGGAGTGCCCCAGTTTTCTCGCACAGTCCCCATTGGCACTTACCAGATGCAGAATGCCCTTTCCCGGGCGATGAAT
TTGCCTCCTTCCCGCAACCCAGAAATTTTGCAGGGCATGACCATTCCCGTCACCCAGTTCGACACCATGAGCACCCAGGG
CACAGCGGTTAATCCCGGCATGAATGCCCTAATGCGGGTCATGGGTGAACTAACCGACGAGCTGCGGCGGTCTATCAATT
TCTACCTCAACCAGAGTGAAGAATTGGAATTGGTGCAGTTACTCTTGGCCGGCCCCGGTGGTGGTCTGATCCAATTGGAT
GAATATTTCACCCAACGCTTAAGTATTCCCACCGTCAGGGTCGACCCCTTTGAAGCTCTGGCGATCGACACTGATCAGAA
CTTTTCCGACGTAGAGCGTCCCAGTCTGGCCACGGTTTTGGGTTTGGGTATCCGGGAAGCCTAG

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(17-241)

Type IV pilus assembly protein PilM; (PilM_2)

(282-365)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

98.093

100

0.981