Detailed information    

insolico Bioinformatically predicted

Overview

Name   ideA   Type   Regulator
Locus tag   IOD66_RS00440 Genome accession   NZ_CP063424
Coordinates   84785..85498 (+) Length   237 a.a.
NCBI ID   WP_232015275.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae strain APP5     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 79785..90498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOD66_RS11285 - 80431..80559 (-) 129 WP_001260374.1 type VI secretion protein -
  IOD66_RS00415 (IOD66_00425) - 80825..81103 (+) 279 WP_000015696.1 tyrosine-type recombinase/integrase -
  IOD66_RS00420 (IOD66_00430) cadR 81558..81965 (-) 408 WP_053409935.1 Cd(II)/Pb(II)-responsive transcriptional regulator -
  IOD66_RS00425 (IOD66_00435) - 82061..82957 (+) 897 WP_053409936.1 cation transporter -
  IOD66_RS00430 (IOD66_00440) lspA 82961..83473 (+) 513 WP_003821921.1 signal peptidase II -
  IOD66_RS00435 (IOD66_00445) - 83495..84782 (+) 1288 Protein_86 ISL3 family transposase -
  IOD66_RS00440 (IOD66_00450) ideA 84785..85498 (+) 714 WP_232015275.1 endonuclease Regulator
  IOD66_RS00445 (IOD66_00455) - 85907..87946 (-) 2040 WP_004249372.1 DUF87 domain-containing protein -
  IOD66_RS00450 (IOD66_00460) - 87943..89361 (-) 1419 WP_004249371.1 SIR2 family protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27405.53 Da        Isoelectric Point: 6.9188

>NTDB_id=495551 IOD66_RS00440 WP_232015275.1 84785..85498(+) (ideA) [Actinobacillus pleuropneumoniae strain APP5]
MVSGWWGEGAPSTIKSVYPFFIALFAIPAIAEHPTSFSQAKRFAREIYQDNQSTFYCGCSYSNDGAIDAASCGYEPRKQP
KRGERLEWEHVVSAWEIGHQRQCWQNGGRRNCEKNDPEFSKMVSDLHNLVPSVGELNGDRSNFRFGMIPNEPRSYGQCDF
EVDFKDRRAEPPANRQGDIARIYFYMRDQYGLRLSRQQTQLFEAWSRMDPVDEWEKVRDFKIKTIQGNSNCHVSNSC

Nucleotide


Download         Length: 714 bp        

>NTDB_id=495551 IOD66_RS00440 WP_232015275.1 84785..85498(+) (ideA) [Actinobacillus pleuropneumoniae strain APP5]
GTGGTATCAGGTTGGTGGGGTGAAGGTGCCCCATCAACCATTAAATCCGTATACCCTTTCTTTATAGCGTTATTCGCTAT
ACCTGCAATTGCAGAACACCCCACATCGTTCAGTCAGGCAAAACGATTTGCCCGAGAAATTTACCAAGACAACCAGAGTA
CGTTTTACTGTGGATGTAGCTATAGCAATGATGGTGCGATTGATGCTGCATCTTGCGGATATGAACCAAGAAAGCAACCG
AAACGAGGTGAACGCTTAGAGTGGGAACATGTAGTCTCAGCTTGGGAAATTGGCCATCAACGCCAATGCTGGCAAAATGG
TGGTCGTCGGAACTGCGAAAAGAATGATCCTGAGTTTTCTAAAATGGTTTCGGATCTCCATAACCTCGTACCATCTGTAG
GAGAGCTCAATGGGGATAGGTCAAATTTTCGATTTGGCATGATTCCGAATGAACCAAGATCCTATGGTCAATGTGATTTC
GAAGTTGATTTCAAAGACCGTCGAGCAGAACCACCAGCTAACCGTCAGGGTGATATTGCTAGAATTTATTTCTACATGCG
AGATCAATACGGCCTAAGACTCAGTAGGCAACAAACTCAGCTATTTGAAGCTTGGTCAAGAATGGACCCTGTTGACGAAT
GGGAAAAAGTGCGTGATTTTAAGATTAAAACTATTCAAGGTAACTCTAACTGCCATGTGTCAAATAGCTGTTAA

Domains

Predicted by InterProScan.

Endonuclease I (Endonuclease_1)

(63-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ideA Vibrio cholerae O1 str. 2010EL-1786

92.76

93.249

0.865
  dns Vibrio parahaemolyticus RIMD 2210633

51.948

97.468

0.506
  dns Aliivibrio fischeri ES114

52.423

95.781

0.502
  dns Vibrio cholerae strain A1552

50.661

95.781

0.485