Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   INP70_RS01395 Genome accession   NZ_CP063420
Coordinates   301929..302561 (-) Length   210 a.a.
NCBI ID   WP_000242749.1    Uniprot ID   A0A6G8D3R0
Organism   Vibrio cholerae strain VC_hf7     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 296929..307561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP70_RS01375 - 297079..298290 (+) 1212 WP_000215480.1 aspartate aminotransferase family protein -
  INP70_RS01380 astA 298430..299449 (+) 1020 WP_000962048.1 arginine N-succinyltransferase -
  INP70_RS01385 astD 299459..300916 (+) 1458 WP_000150143.1 succinylglutamate-semialdehyde dehydrogenase -
  INP70_RS01390 - 301059..301850 (+) 792 WP_000189091.1 DUF1338 domain-containing protein -
  INP70_RS01395 crp 301929..302561 (-) 633 WP_000242749.1 cAMP-activated global transcriptional regulator CRP Regulator
  INP70_RS01400 - 302804..303673 (-) 870 WP_001274667.1 phosphoribulokinase -
  INP70_RS01405 - 303770..303979 (-) 210 WP_000586561.1 YheU family protein -
  INP70_RS01410 - 304108..305097 (-) 990 WP_000627575.1 hydrolase -
  INP70_RS01415 - 305094..305579 (-) 486 WP_001278735.1 TIGR02444 family protein -
  INP70_RS01420 - 305580..307496 (-) 1917 WP_000627676.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23635.45 Da        Isoelectric Point: 8.2784

>NTDB_id=495514 INP70_RS01395 WP_000242749.1 301929..302561(-) (crp) [Vibrio cholerae strain VC_hf7]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKTPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLARQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=495514 INP70_RS01395 WP_000242749.1 301929..302561(-) (crp) [Vibrio cholerae strain VC_hf7]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACACTAGAGTGGTTTCTTTCACATTGTCACATTCATAAGTACCCATCAAA
AAGCACGCTGATCCACGCGGGTGAGAAGGCTGAAACGCTGTACTACATCGTAAAAGGTTCAGTTGCGGTACTGATCAAAG
ATGAAGAAGGTAAAGAGATGATTCTCTCTTACCTGAACCAAGGTGATTTCATCGGTGAACTCGGCCTGTTTGAAGAAGGT
CAAGAGCGTACCGCTTGGGTTCGTGCCAAAACACCGTGTGAAGTGGCTGAAATCTCATTTAAGAAATTCCGTCAGTTAAT
CCAAGTTAACCCAGACATTTTGATGCGCCTTTCAGGTCAAATGGCTCGTCGTCTGCAAGTGACCAGCCAGAAAGTTGGCG
ACCTTGCGTTCCTAGACGTAACTGGCCGTATCGCACAGACTCTGCTGAACCTTGCACGTCAGCCCGATGCGATGACTCAC
CCTGATGGTATGCAAATCAAGATCACTCGCCAAGAGATCGGTCAAATTGTTGGCTGTTCTCGCGAAACCGTTGGCCGCAT
CCTGAAGATGCTGGAAGAGCAGAACCTGATCTCTGCCCACGGTAAAACCATCGTGGTTTACGGCACTCGCTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8D3R0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

100

100

1
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467