Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   EKS25_RS00640 Genome accession   NZ_CP063382
Coordinates   106453..106935 (+) Length   160 a.a.
NCBI ID   WP_020830817.1    Uniprot ID   -
Organism   Listeria monocytogenes strain clinical isolate of L. monocytogenes isolate 15-01121     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 101453..111935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKS25_RS00570 (EKS25_00570) - 101537..102514 (+) 978 WP_003743364.1 DNA cytosine methyltransferase -
  EKS25_RS00575 (EKS25_00575) - 102511..102705 (+) 195 WP_003735028.1 hypothetical protein -
  EKS25_RS00580 (EKS25_00580) - 102732..103337 (+) 606 WP_003743367.1 DUF1642 domain-containing protein -
  EKS25_RS00585 (EKS25_00585) - 103334..103513 (+) 180 WP_003735032.1 hypothetical protein -
  EKS25_RS00590 (EKS25_00590) - 103510..103695 (+) 186 WP_003735031.1 hypothetical protein -
  EKS25_RS00595 (EKS25_00595) - 103692..104195 (+) 504 WP_003743369.1 YopX family protein -
  EKS25_RS00600 (EKS25_00600) - 104196..104369 (+) 174 WP_020830809.1 hypothetical protein -
  EKS25_RS00605 (EKS25_00605) - 104366..104572 (+) 207 WP_020830810.1 hypothetical protein -
  EKS25_RS00610 (EKS25_00610) - 104569..104859 (+) 291 WP_020830811.1 hypothetical protein -
  EKS25_RS00615 (EKS25_00615) - 105045..105239 (+) 195 WP_020830812.1 hypothetical protein -
  EKS25_RS00620 (EKS25_00620) - 105254..105481 (+) 228 WP_020830813.1 ASCH/PUA domain-containing protein -
  EKS25_RS00625 (EKS25_00625) - 105493..105780 (+) 288 WP_020830814.1 hypothetical protein -
  EKS25_RS00630 (EKS25_00630) - 105777..106055 (+) 279 WP_020830815.1 DUF1642 domain-containing protein -
  EKS25_RS00635 (EKS25_00635) - 106052..106453 (+) 402 WP_031646071.1 hypothetical protein -
  EKS25_RS00640 (EKS25_00640) ssbA 106453..106935 (+) 483 WP_020830817.1 single-stranded DNA-binding protein Machinery gene
  EKS25_RS00645 (EKS25_00645) - 106954..107136 (+) 183 WP_003734964.1 hypothetical protein -
  EKS25_RS00650 (EKS25_00650) - 107081..107485 (+) 405 WP_003734965.1 DUF1064 domain-containing protein -
  EKS25_RS00655 (EKS25_00655) - 107489..107872 (+) 384 WP_031646070.1 DUF2481 family protein -
  EKS25_RS15095 - 107865..107990 (+) 126 WP_003734967.1 hypothetical protein -
  EKS25_RS00660 (EKS25_00660) - 108012..108446 (+) 435 WP_003734968.1 ArpU family phage packaging/lysis transcriptional regulator -
  EKS25_RS00665 (EKS25_00665) - 108706..109245 (+) 540 WP_003727778.1 hypothetical protein -
  EKS25_RS00670 (EKS25_00670) - 109291..109833 (+) 543 WP_003743392.1 terminase small subunit -
  EKS25_RS00675 (EKS25_00675) - 109802..111133 (+) 1332 WP_020830818.1 PBSX family phage terminase large subunit -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17838.68 Da        Isoelectric Point: 4.9909

>NTDB_id=494926 EKS25_RS00640 WP_020830817.1 106453..106935(+) (ssbA) [Listeria monocytogenes strain clinical isolate of L. monocytogenes isolate 15-01121]
MMNRVVLVGRLTKDPELRYTPAGVAVTTFTLAVNRAFTNQNGEREADFIQCVVWRKPAENVANFLKKGSMAGVDGRIQTR
NYEDNDGKRVFVTEVVAESVQFLEPKNNNVEGATSNNYQNKANYSNNNQTSSYRADTSQKSDSFASEGKPIDISDDDLPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=494926 EKS25_RS00640 WP_020830817.1 106453..106935(+) (ssbA) [Listeria monocytogenes strain clinical isolate of L. monocytogenes isolate 15-01121]
ATGATGAATCGTGTAGTACTTGTAGGACGATTAACAAAAGACCCTGAATTACGTTACACTCCAGCAGGCGTAGCAGTAAC
GACTTTTACATTAGCTGTAAACCGCGCTTTCACTAATCAGAATGGAGAACGAGAAGCCGACTTTATTCAATGTGTTGTTT
GGCGTAAACCAGCGGAAAATGTTGCTAATTTCTTGAAGAAAGGAAGCATGGCGGGCGTTGATGGTCGAATACAGACTCGA
AATTATGAGGACAACGACGGTAAACGCGTTTTCGTTACGGAAGTAGTTGCTGAATCAGTTCAATTCTTAGAGCCAAAAAA
TAACAACGTAGAAGGCGCTACATCGAATAATTATCAAAACAAGGCTAATTATTCAAATAACAATCAAACAAGCTCATATC
GAGCGGATACGAGCCAGAAGAGCGATTCATTTGCAAGTGAAGGTAAGCCGATAGATATTTCAGATGATGATTTGCCATTT
TAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.116

100

0.7
  ssb Latilactobacillus sakei subsp. sakei 23K

55.294

100

0.587
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

66.25

0.406