Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SALIVA_RS08900 Genome accession   NC_017595
Coordinates   1964557..1965075 (-) Length   172 a.a.
NCBI ID   WP_002891844.1    Uniprot ID   A0AB33ZBY1
Organism   Streptococcus salivarius JIM8777     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1959557..1970075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVA_RS08880 (SALIVA_1819) - 1961467..1962411 (+) 945 WP_013991181.1 magnesium transporter CorA family protein -
  SALIVA_RS08885 (SALIVA_1820) - 1962481..1963152 (+) 672 WP_014635046.1 DUF1129 domain-containing protein -
  SALIVA_RS08890 (SALIVA_1821) - 1963269..1964150 (+) 882 WP_014635047.1 DUF4300 family protein -
  SALIVA_RS08895 (SALIVA_1822) rpsR 1964276..1964515 (-) 240 WP_000068665.1 30S ribosomal protein S18 -
  SALIVA_RS08900 (SALIVA_1823) ssb 1964557..1965075 (-) 519 WP_002891844.1 single-stranded DNA-binding protein Machinery gene
  SALIVA_RS08905 (SALIVA_1824) rpsF 1965087..1965377 (-) 291 WP_002884188.1 30S ribosomal protein S6 -
  SALIVA_RS08910 (SALIVA_1825) - 1965598..1966551 (+) 954 WP_014635048.1 hypothetical protein -
  SALIVA_RS08920 (SALIVA_1827) mutY 1967719..1968870 (+) 1152 WP_014635049.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18594.32 Da        Isoelectric Point: 4.9163

>NTDB_id=49489 SALIVA_RS08900 WP_002891844.1 1964557..1965075(-) (ssb) [Streptococcus salivarius JIM8777]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVNRNFKGANGERETDFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRAAREGHSGGSYNAGGFDNSNSFGGGASTGGSFGGSQPAQSTPNFGRDESPFGNS
NPMDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=49489 SALIVA_RS08900 WP_002891844.1 1964557..1965075(-) (ssb) [Streptococcus salivarius JIM8777]
ATGATTAATAATGTCGTACTCGTTGGTCGCATGACCCGTGATGCGGAACTTCGTTATACACCAAGTAATGTTGCAGTTGC
TACATTCAGTCTTGCAGTTAATCGTAACTTCAAGGGTGCTAATGGTGAACGTGAAACTGACTTTATTAACTGTGTTATCT
GGCGCCAGCAAGCTGAAAATTTGGCTAACTGGGCTAAGAAAGGCGCATTGATTGGAATTACAGGTCGTATTCAGACTCGT
AACTATGAAAATCAACAAGGTCAACGTGTTTACGTAACTGAAGTTGTCGCTGATAATTTCCAAATGTTGGAAAGCCGTGC
GGCACGTGAAGGTCACAGTGGTGGTTCTTACAACGCTGGAGGATTTGATAATTCAAATTCATTCGGTGGAGGAGCTTCAA
CTGGTGGTTCATTTGGTGGATCACAACCTGCACAATCTACACCAAACTTCGGTCGTGATGAGAGTCCATTTGGTAATTCA
AATCCAATGGATATTTCAGATGACGATCTCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.046

100

0.587
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.301

100

0.587
  ssb Glaesserella parasuis strain SC1401

32.461

100

0.36

Multiple sequence alignment