Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   SALIVA_RS08195 Genome accession   NC_017595
Coordinates   1819181..1820215 (-) Length   344 a.a.
NCBI ID   WP_371748832.1    Uniprot ID   -
Organism   Streptococcus salivarius JIM8777     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1814181..1825215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVA_RS08170 (SALIVA_1668) ilvD 1814452..1816170 (-) 1719 WP_014632703.1 dihydroxy-acid dehydratase -
  SALIVA_RS08175 (SALIVA_1669) - 1816283..1817464 (+) 1182 WP_014634936.1 NAD(P)/FAD-dependent oxidoreductase -
  SALIVA_RS08185 (SALIVA_1671) trmB 1817681..1818322 (-) 642 WP_003096317.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  SALIVA_RS08190 (SALIVA_1672) ccrZ 1818332..1819123 (-) 792 WP_002884270.1 cell cycle regulator CcrZ -
  SALIVA_RS08195 (SALIVA_1673) pptB 1819181..1820215 (-) 1035 WP_371748832.1 ABC transporter permease Regulator
  SALIVA_RS08200 (SALIVA_1674) pptA 1820215..1820946 (-) 732 WP_014634937.1 ABC transporter ATP-binding protein Regulator
  SALIVA_RS08205 (SALIVA_1675) - 1821011..1821430 (+) 420 WP_014634938.1 HIT family protein -
  SALIVA_RS08210 (SALIVA_1676) - 1821427..1821726 (+) 300 WP_014634939.1 hypothetical protein -
  SALIVA_RS10625 (SALIVA_1677) - 1821907..1822074 (-) 168 WP_014634940.1 hypothetical protein -
  SALIVA_RS08215 (SALIVA_1678) - 1822649..1823257 (-) 609 WP_002884297.1 DUF4230 domain-containing protein -
  SALIVA_RS10815 (SALIVA_1680) - 1823275..1823400 (-) 126 WP_002884447.1 hypothetical protein -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 39917.36 Da        Isoelectric Point: 10.5986

>NTDB_id=49484 SALIVA_RS08195 WP_371748832.1 1819181..1820215(-) (pptB) [Streptococcus salivarius JIM8777]
MAKLFKERSKRFNARCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLRHFPKNPWAIILGLLVLCLLLPFWGNIATYLEP
ADKHYLLVKEEEVLDHVKKATGRAFRFWVIVQSLIFILVIPLFLALGLPVWGVILVAVAMAILKYFIFQKKAQPFYKQSG
LNWTEAIAAENKRQQSILKFFSLFTNVKGITSSVKRRAYLDGILKRTKKDKEHTWYNLYLRAFLRSGDYFALSLRLFALT
LLVIFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQRMANLMPVGKDMQVSNLKRLISQIVLGMTLVQAICLFDLKFS
LILVGMMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=49484 SALIVA_RS08195 WP_371748832.1 1819181..1820215(-) (pptB) [Streptococcus salivarius JIM8777]
ATAGCTAAGCTATTTAAGGAGCGTAGCAAGCGATTCAATGCCCGCTGTGCTAAGTATAGTCGCTACGTCTTTAATGATCA
CTTTATCTTGGTTCTTCTCTTTCTGCTAGGTTTTGTATTGGTTCAGTATAGCCAGTTGCTTCGACATTTTCCAAAGAATC
CGTGGGCAATCATTCTTGGTTTGCTAGTGCTTTGTCTTCTATTGCCTTTCTGGGGGAATATTGCGACTTATTTAGAGCCA
GCTGATAAGCATTACCTTTTGGTGAAGGAAGAAGAGGTGTTAGACCATGTTAAGAAGGCAACAGGGCGTGCTTTTAGATT
TTGGGTAATCGTACAAAGCCTGATTTTTATTTTGGTTATTCCGCTCTTTTTAGCCTTGGGACTTCCAGTTTGGGGAGTTA
TCCTTGTAGCTGTGGCTATGGCTATTCTTAAGTACTTCATTTTTCAGAAAAAGGCTCAACCTTTTTATAAGCAGTCTGGA
CTGAATTGGACTGAGGCTATTGCAGCGGAAAATAAGCGTCAACAATCGATTCTGAAGTTCTTTTCACTCTTTACCAATGT
TAAAGGGATTACGTCGAGTGTTAAACGCCGTGCTTATTTGGATGGTATTCTCAAACGTACAAAGAAAGACAAGGAACATA
CTTGGTACAATCTTTACCTAAGAGCCTTCTTGCGTTCTGGGGATTACTTTGCCCTTAGTTTACGCCTGTTTGCCCTAACA
CTTCTAGTTATCTTTTTGGTTCCTGAAAAATGGTTGGCTATGGTGCTTGTGGTTGTTTTTGATTACCTCTTGCTCTTTCA
GCTCACGGCACTTAAATCGCACTTTGCTTATCAGAGAATGGCTAACCTTATGCCAGTTGGAAAAGACATGCAGGTAAGCA
ATCTTAAGCGCTTGATTAGCCAGATTGTACTTGGGATGACTCTGGTACAGGCTATTTGTCTCTTCGACCTTAAGTTTAGC
CTGATTTTGGTTGGAATGATGCTAGTTCTGAGCCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

97.384

100

0.974

  pptB Streptococcus thermophilus LMD-9

93.314

100

0.933


Multiple sequence alignment