Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   IPU21_RS12600 Genome accession   NZ_CP063368
Coordinates   2673381..2673884 (-) Length   167 a.a.
NCBI ID   WP_096539724.1    Uniprot ID   A0AAQ0M749
Organism   Staphylococcus delphini strain 245-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2668381..2678884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPU21_RS12585 (IPU21_12605) - 2669517..2671507 (+) 1991 Protein_2455 catalase -
  IPU21_RS12590 (IPU21_12610) - 2671583..2672815 (-) 1233 WP_179295243.1 MFS transporter -
  IPU21_RS12595 (IPU21_12615) rpsR 2673086..2673328 (-) 243 WP_014614919.1 30S ribosomal protein S18 -
  IPU21_RS12600 (IPU21_12620) ssbA 2673381..2673884 (-) 504 WP_096539724.1 single-stranded DNA-binding protein Machinery gene
  IPU21_RS12605 (IPU21_12625) rpsF 2673907..2674203 (-) 297 WP_014614921.1 30S ribosomal protein S6 -
  IPU21_RS12610 (IPU21_12630) - 2674546..2676030 (+) 1485 WP_212574881.1 B domain-containing protein -
  IPU21_RS12615 (IPU21_12635) - 2676084..2676893 (-) 810 WP_096648970.1 ABC transporter permease -
  IPU21_RS12620 (IPU21_12640) - 2676886..2677821 (-) 936 WP_212574882.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18610.29 Da        Isoelectric Point: 5.1957

>NTDB_id=494821 IPU21_RS12600 WP_096539724.1 2673381..2673884(-) (ssbA) [Staphylococcus delphini strain 245-1]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNFLFKGSLAGVDGRLQSR
SYENQEGRRVFVTEVVCDSVQFLEPKSQNQRHANQNQGNQFDSYGQGFGGQQQGQNSSYQNNHQPANDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=494821 IPU21_RS12600 WP_096539724.1 2673381..2673884(-) (ssbA) [Staphylococcus delphini strain 245-1]
ATGCTTAATAGAGTCGTATTAGTAGGTCGCTTAACTAAAGATCCAGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACATTTACCTTAGCGGTTAATCGTACATTTACGAATGCGCAAGGGGAACGTGAAGCAGACTTCATTAACTGTGTTGTTT
TCCGTAAGCAAGCAGAAAATGTTAACAATTTCTTGTTTAAAGGAAGTCTCGCTGGCGTTGACGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTGTATTCGTCACTGAAGTGGTATGTGATAGTGTTCAATTCCTTGAGCCAAAATC
ACAAAACCAACGTCACGCGAACCAAAACCAAGGCAATCAATTCGATAGCTACGGTCAAGGATTCGGTGGCCAACAGCAAG
GCCAAAATTCGTCTTACCAAAACAATCATCAACCAGCTAACGATAATCCATTTGCGAATGCGAACGGTCCTATAGATATT
AGCGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.143

100

0.683
  ssb Latilactobacillus sakei subsp. sakei 23K

56.725

100

0.581
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

65.868

0.383