Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   IPU21_RS04580 Genome accession   NZ_CP063368
Coordinates   1016960..1017589 (+) Length   209 a.a.
NCBI ID   WP_212575318.1    Uniprot ID   A0AAQ0D8U0
Organism   Staphylococcus delphini strain 245-1     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1011960..1022589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPU21_RS04555 (IPU21_04570) - 1012873..1013871 (-) 999 WP_096542445.1 FUSC family protein -
  IPU21_RS04560 (IPU21_04575) map 1013968..1014729 (+) 762 WP_019166460.1 type I methionyl aminopeptidase -
  IPU21_RS04565 (IPU21_04580) - 1014827..1015216 (+) 390 WP_096542447.1 hypothetical protein -
  IPU21_RS04570 (IPU21_04585) liaF 1015229..1015930 (+) 702 WP_096606284.1 cell wall-active antibiotics response protein LiaF -
  IPU21_RS04575 (IPU21_04590) vraS 1015927..1016970 (+) 1044 WP_096542451.1 sensor histidine kinase Regulator
  IPU21_RS04580 (IPU21_04595) vraR 1016960..1017589 (+) 630 WP_212575318.1 response regulator transcription factor Regulator
  IPU21_RS04585 (IPU21_04600) - 1018229..1018810 (-) 582 WP_096597677.1 beta-class carbonic anhydrase -
  IPU21_RS04590 (IPU21_04605) - 1018843..1020189 (-) 1347 WP_212575319.1 YihY/virulence factor BrkB family protein -
  IPU21_RS04595 (IPU21_04610) - 1020405..1020692 (-) 288 WP_014613485.1 YtxH domain-containing protein -
  IPU21_RS04600 (IPU21_04615) - 1020700..1021158 (-) 459 WP_019166466.1 low molecular weight protein-tyrosine-phosphatase -
  IPU21_RS04605 (IPU21_04620) - 1021292..1021495 (+) 204 WP_019169369.1 DUF1128 family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23498.19 Da        Isoelectric Point: 5.1722

>NTDB_id=494797 IPU21_RS04580 WP_212575318.1 1016960..1017589(+) (vraR) [Staphylococcus delphini strain 245-1]
MTIKVLFVDDHEMVRIGISSYLSTQPEIEVVGEGASGKEAIAKAHELKPDLILMDLVMTDMDGVEATMQIKKDLPHIKVV
MLTSYIEDKEVYRALDAGVDSYILKTTSANDIAEAVRKTSRGESVFEAEVLVKMRNRMKQRAELYELLTEREMEILLLIS
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHGLIE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=494797 IPU21_RS04580 WP_212575318.1 1016960..1017589(+) (vraR) [Staphylococcus delphini strain 245-1]
ATGACAATTAAAGTATTATTTGTTGATGATCATGAAATGGTACGTATAGGGATTTCAAGTTATTTATCAACACAACCCGA
AATTGAAGTGGTGGGGGAAGGCGCCTCAGGTAAGGAAGCGATCGCAAAAGCCCACGAACTGAAACCGGATTTAATTTTAA
TGGATTTAGTGATGACGGATATGGACGGCGTGGAAGCGACAATGCAAATTAAGAAAGATCTGCCACATATTAAAGTCGTA
ATGCTGACGAGTTATATTGAAGATAAAGAAGTGTATCGTGCATTAGATGCCGGTGTCGATAGTTATATTTTAAAAACGAC
AAGTGCTAATGATATTGCGGAAGCGGTACGTAAAACGAGTCGTGGTGAGTCTGTATTTGAAGCGGAAGTATTAGTGAAAA
TGCGCAATCGAATGAAGCAACGTGCGGAGTTATATGAGTTGTTGACTGAGCGCGAGATGGAAATTTTGTTATTGATTTCA
AAAGGCTATTCGAACCAAGAAATTGCGAGTGCGTCACATATTACCATTAAGACGGTAAAGACGCATGTGAGTAATATTTT
AAGTAAACTTGAAGTGCAAGACCGTACGCAAGCAGTCATTTATGCATTCCAACACGGCTTGATTGAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(147-202)

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

92.344

100

0.923
  degU Bacillus subtilis subsp. subtilis str. 168

35.714

100

0.383