Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   SALIVA_RS04845 Genome accession   NC_017595
Coordinates   997587..998399 (+) Length   270 a.a.
NCBI ID   WP_013990680.1    Uniprot ID   A0AAX1YAX4
Organism   Streptococcus salivarius JIM8777     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 992587..1003399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVA_RS04820 (SALIVA_0986) - 992930..993628 (-) 699 WP_014633207.1 amino acid ABC transporter permease -
  SALIVA_RS04825 (SALIVA_0987) - 993646..994479 (-) 834 WP_014634410.1 transporter substrate-binding domain-containing protein -
  SALIVA_RS04830 (SALIVA_0988) - 994489..995256 (-) 768 WP_014634411.1 amino acid ABC transporter ATP-binding protein -
  SALIVA_RS04835 (SALIVA_0989) vicR 995541..996248 (+) 708 WP_014634412.1 response regulator YycF Regulator
  SALIVA_RS04840 (SALIVA_0990) vicK 996241..997581 (+) 1341 WP_014634413.1 cell wall metabolism sensor histidine kinase VicK Regulator
  SALIVA_RS04845 (SALIVA_0991) vicX 997587..998399 (+) 813 WP_013990680.1 MBL fold metallo-hydrolase Regulator
  SALIVA_RS04850 (SALIVA_0992) - 998458..998817 (+) 360 WP_014634414.1 YbaN family protein -
  SALIVA_RS04855 (SALIVA_0993) - 998869..1000083 (-) 1215 WP_014634415.1 aminoacyltransferase -
  SALIVA_RS04860 (SALIVA_0994) yidA 1000085..1000894 (-) 810 WP_002885000.1 sugar-phosphatase -
  SALIVA_RS04865 (SALIVA_0995) - 1001072..1001938 (+) 867 WP_014634416.1 GNAT family N-acetyltransferase -
  SALIVA_RS04870 (SALIVA_0996) - 1002021..1002407 (+) 387 WP_002884910.1 DUF1934 domain-containing protein -

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30108.96 Da        Isoelectric Point: 5.3499

>NTDB_id=49468 SALIVA_RS04845 WP_013990680.1 997587..998399(+) (vicX) [Streptococcus salivarius JIM8777]
MTSDLGFKYSILASGSTGNSFYLETPEKKILVDAGLSGKKITSLLAEIDRDPSDLDAILVTHEHKDHIHGVGVLARKYGM
DIYANEKTWQIMDSKNMLGKIDNSQKHVFSRDKLLTFGDIDIESFGVSHDAIDPQFYRFMKDGKSFVMLTDTGYVSDRMA
GIIENADGYLIESNHDVEILRAGSYPWSTKQRILSDQGHLCNEDGADAMIRTIGNKTKKIYLGHLSKENNIKELAHMTME
NQLARADFGVGTDFKVYDTSPDTATPLTDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=49468 SALIVA_RS04845 WP_013990680.1 997587..998399(+) (vicX) [Streptococcus salivarius JIM8777]
ATGACCTCAGATTTAGGGTTTAAATATAGTATTTTGGCTTCAGGGTCAACTGGTAATTCCTTTTACTTGGAAACTCCAGA
GAAGAAGATTCTTGTAGATGCTGGTTTGTCTGGTAAGAAAATCACAAGTTTGCTAGCTGAGATTGATCGTGATCCGAGTG
ATTTGGATGCAATCTTAGTAACGCATGAACACAAGGATCACATCCATGGTGTAGGCGTTTTAGCTCGTAAATATGGCATG
GATATATACGCCAACGAGAAAACCTGGCAAATTATGGATAGTAAAAATATGCTTGGTAAGATTGATAATAGCCAGAAACA
TGTTTTTTCTCGTGATAAGCTTCTGACCTTTGGAGACATTGATATTGAGTCTTTTGGAGTTAGTCACGATGCTATTGATC
CACAGTTCTATCGCTTTATGAAAGATGGAAAGAGTTTTGTCATGTTGACGGATACGGGTTATGTTTCTGATCGTATGGCA
GGTATTATTGAAAATGCCGATGGCTATCTGATTGAGTCCAATCATGATGTTGAAATCCTTAGAGCAGGTTCATATCCTTG
GTCAACCAAGCAACGTATCCTCTCTGATCAAGGTCACTTGTGTAATGAAGATGGAGCGGATGCTATGATTCGTACCATTG
GTAATAAAACTAAAAAAATCTACTTGGGTCACCTTTCCAAAGAAAATAATATCAAGGAGTTGGCCCACATGACGATGGAA
AATCAGTTGGCACGTGCTGACTTTGGTGTTGGAACTGACTTTAAAGTTTATGATACCTCACCAGACACAGCGACTCCACT
GACAGATATTTAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.239

99.259

0.767

Multiple sequence alignment