Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   SALIVA_RS02040 Genome accession   NC_017595
Coordinates   391670..392113 (+) Length   147 a.a.
NCBI ID   WP_014633964.1    Uniprot ID   -
Organism   Streptococcus salivarius JIM8777     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 386670..397113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVA_RS02025 (SALIVA_0404) gdhA 387742..389094 (+) 1353 WP_014633961.1 NADP-specific glutamate dehydrogenase -
  SALIVA_RS02030 (SALIVA_0405) - 389582..390916 (+) 1335 WP_231848735.1 YfhO family protein -
  SALIVA_RS02035 (SALIVA_0406) - 391074..391484 (+) 411 WP_014633963.1 peptide deformylase -
  SALIVA_RS02040 (SALIVA_0407) rcrR 391670..392113 (+) 444 WP_014633964.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  SALIVA_RS02045 (SALIVA_0408) rcrP 392117..393931 (+) 1815 WP_014633965.1 ABC transporter ATP-binding protein Regulator
  SALIVA_RS02050 (SALIVA_0409) rcrQ 393921..395699 (+) 1779 WP_014633966.1 ABC transporter ATP-binding protein Regulator
  SALIVA_RS02055 (SALIVA_0410) - 395807..396430 (+) 624 WP_014633967.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17190.70 Da        Isoelectric Point: 9.6402

>NTDB_id=49453 SALIVA_RS02040 WP_014633964.1 391670..392113(+) (rcrR) [Streptococcus salivarius JIM8777]
MHGKDTFSEFREFINTMESRVQELGKVHGVEHLAGPQGFAVKYLSDNQDKEIFIKDIEKRLCISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKARDVKHFREAIHEQLLEGISKEDAEIAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=49453 SALIVA_RS02040 WP_014633964.1 391670..392113(+) (rcrR) [Streptococcus salivarius JIM8777]
ATGCATGGAAAAGATACTTTTAGTGAATTCAGAGAATTCATCAATACTATGGAATCTCGCGTGCAAGAGTTAGGAAAGGT
CCATGGGGTTGAGCATTTAGCTGGCCCTCAAGGATTTGCTGTCAAGTATTTGTCTGACAATCAAGATAAAGAAATCTTTA
TCAAAGACATTGAAAAAAGACTATGTATTTCTAAATCAGTGGCTAGTAATTTGGTCAAACGAATGGAAAAAAATGGTTTT
GTTGAGTTGGTGACATCAGACAAGGATAAACGCTACAAGTATGTTCATCTGACAGACTTGGGTAAAAAGAAAGCTCGAGA
TGTCAAACATTTTCGAGAGGCCATCCATGAACAGCTGTTAGAAGGTATTTCCAAAGAAGATGCTGAAATAGCCTTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAAAAGAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(37-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

58.156

95.918

0.558

Multiple sequence alignment