Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SALIVA_RS02050 Genome accession   NC_017595
Coordinates   393921..395699 (+) Length   592 a.a.
NCBI ID   WP_014633966.1    Uniprot ID   -
Organism   Streptococcus salivarius JIM8777     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 388921..400699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVA_RS02030 (SALIVA_0405) - 389582..390916 (+) 1335 WP_231848735.1 YfhO family protein -
  SALIVA_RS02035 (SALIVA_0406) - 391074..391484 (+) 411 WP_014633963.1 peptide deformylase -
  SALIVA_RS02040 (SALIVA_0407) rcrR 391670..392113 (+) 444 WP_014633964.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  SALIVA_RS02045 (SALIVA_0408) rcrP 392117..393931 (+) 1815 WP_014633965.1 ABC transporter ATP-binding protein Regulator
  SALIVA_RS02050 (SALIVA_0409) rcrQ 393921..395699 (+) 1779 WP_014633966.1 ABC transporter ATP-binding protein Regulator
  SALIVA_RS02055 (SALIVA_0410) - 395807..396430 (+) 624 WP_014633967.1 GNAT family N-acetyltransferase -
  SALIVA_RS02060 (SALIVA_0411) - 396578..397201 (+) 624 WP_014633968.1 GTP pyrophosphokinase family protein -
  SALIVA_RS02065 (SALIVA_0412) - 397203..397880 (+) 678 WP_014633969.1 response regulator transcription factor -
  SALIVA_RS02070 (SALIVA_0413) - 397894..399117 (+) 1224 WP_014633970.1 HAMP domain-containing sensor histidine kinase -
  SALIVA_RS02075 (SALIVA_0415) pyrH 399351..400088 (+) 738 WP_002885551.1 UMP kinase -
  SALIVA_RS02080 (SALIVA_0416) frr 400103..400660 (+) 558 WP_014633971.1 ribosome recycling factor -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 65114.15 Da        Isoelectric Point: 5.3436

>NTDB_id=49455 SALIVA_RS02050 WP_014633966.1 393921..395699(+) (rcrQ) [Streptococcus salivarius JIM8777]
MENKPKTSSYKRLKPYIKGFQIPFVLAIFGAIISAVITVIGPDKLKKITNTITEGITPTKMGTIPGIDLDKVASIAMTLA
VLYAISAIVGYLQSFTVATVTQRFSQRFRTAIQKKINSVPLNYFDSHSQGDTLSRVTNDVDLLGQSLSQGLGTLITSSVL
LVAAIIMMFYSNVTMAFTAIGSVLIGFVLVAFIMGFSQPLFKRQQENLANINGYIEEIYTGQAVVTSYNAAQESSQAFKG
LNDKLYKSMWQSQFISGIMMPLMIFIGNFGYVMVCLVGAIKVIDGSLTIGDVVAFMTYVRIFSQPLSQIAQGITQLQSAT
AAIGRIFEFLEEKDMDDESAKTAELTDTKGQVVFNHVSFGYTPEKTIIHDFSALAKPGQKIAIVGPTGAGKTTIVNLLMK
FYNIDQGRITIDGVDTNDMKRETVHDQFSMVLQDTWLFEGTIRDNLIYNQENISDEQVIAAAKAVGVHHFITTLPKGYDT
YLDDSVTLSVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMKD
GNIIEQGNHDELMAADGFYADLYNSQFTEEVA

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=49455 SALIVA_RS02050 WP_014633966.1 393921..395699(+) (rcrQ) [Streptococcus salivarius JIM8777]
ATGGAAAATAAGCCAAAAACATCATCCTATAAACGCTTAAAACCCTATATTAAAGGTTTCCAAATTCCGTTTGTCCTTGC
GATTTTTGGAGCAATTATTTCAGCGGTCATTACAGTTATTGGACCAGATAAGCTTAAAAAAATTACCAATACTATTACTG
AAGGGATTACACCTACTAAAATGGGAACGATTCCAGGCATTGATTTGGACAAGGTAGCAAGTATTGCTATGACCTTGGCT
GTTCTCTATGCCATTTCAGCGATTGTTGGTTACTTACAAAGCTTTACGGTTGCGACAGTTACACAACGCTTTTCACAACG
TTTCCGTACAGCTATCCAAAAGAAAATCAACAGTGTCCCTCTTAATTATTTCGATAGTCACTCTCAAGGGGATACCCTCT
CTCGTGTGACTAATGACGTTGACCTTTTGGGACAATCGCTTAGTCAAGGCCTAGGTACCTTGATTACTTCAAGTGTTCTC
TTGGTGGCAGCCATTATTATGATGTTCTACTCAAATGTCACTATGGCTTTTACTGCGATTGGTTCTGTCTTGATAGGTTT
TGTTCTGGTAGCCTTCATCATGGGCTTCTCGCAACCCCTTTTCAAGCGTCAACAAGAAAATTTGGCTAATATTAATGGTT
ATATTGAAGAAATCTACACAGGTCAAGCAGTCGTAACGAGTTACAATGCCGCTCAAGAAAGCAGTCAGGCTTTCAAGGGG
CTTAATGATAAACTCTATAAATCGATGTGGCAATCACAGTTTATCTCAGGTATTATGATGCCACTTATGATTTTCATTGG
GAACTTTGGTTATGTCATGGTCTGTCTTGTGGGTGCCATCAAAGTTATTGATGGTAGCTTGACTATTGGAGATGTGGTAG
CCTTCATGACCTATGTTCGTATCTTCTCACAACCTCTTTCTCAAATTGCCCAAGGGATTACACAACTCCAATCAGCTACT
GCAGCCATTGGTCGTATCTTTGAATTTTTGGAAGAAAAAGATATGGACGACGAGTCAGCTAAGACAGCTGAGTTGACAGA
TACTAAAGGTCAAGTAGTCTTTAATCATGTTTCCTTTGGTTATACTCCTGAAAAGACTATTATTCATGACTTTTCAGCCC
TTGCTAAGCCAGGTCAAAAGATTGCGATCGTTGGTCCAACGGGTGCTGGTAAGACGACTATTGTTAACCTGCTTATGAAG
TTCTATAACATCGACCAAGGTCGTATCACCATTGACGGTGTGGATACTAACGACATGAAACGCGAAACTGTTCATGACCA
ATTCTCTATGGTGCTTCAAGACACTTGGCTTTTTGAAGGTACTATTCGTGATAATTTGATTTACAACCAAGAGAACATTT
CTGACGAGCAAGTTATTGCTGCAGCCAAGGCCGTCGGTGTTCACCACTTCATCACCACACTTCCAAAGGGTTATGATACT
TATTTGGATGATTCTGTGACCTTGTCAGTTGGTCAGAAACAGCTCTTGACCATTGCGCGTGCGCTTCTTAAGGATGCCCC
TCTTCTTATCTTGGATGAAGCGACATCATCGGTTGATACCCGAACAGAAGAATTGATTCAAAAAGCTATGGACAAGCTTA
TGGAAGGCCGGACTTCCTTTGTCATTGCCCACCGCTTATCAACCATTCGAAATGCCGACCTTATCCTTGTGATGAAAGAT
GGTAACATTATTGAACAGGGAAATCATGATGAGCTCATGGCAGCAGATGGTTTCTATGCTGATCTTTATAATAGTCAATT
TACAGAAGAAGTTGCCTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(371-516)

ABC transporter transmembrane region (ABC_membrane)

(25-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

68.75

100

0.688

Multiple sequence alignment