Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   SALIVA_RS02045 Genome accession   NC_017595
Coordinates   392117..393931 (+) Length   604 a.a.
NCBI ID   WP_014633965.1    Uniprot ID   -
Organism   Streptococcus salivarius JIM8777     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 387117..398931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVA_RS02025 (SALIVA_0404) gdhA 387742..389094 (+) 1353 WP_014633961.1 NADP-specific glutamate dehydrogenase -
  SALIVA_RS02030 (SALIVA_0405) - 389582..390916 (+) 1335 WP_231848735.1 YfhO family protein -
  SALIVA_RS02035 (SALIVA_0406) - 391074..391484 (+) 411 WP_014633963.1 peptide deformylase -
  SALIVA_RS02040 (SALIVA_0407) rcrR 391670..392113 (+) 444 WP_014633964.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  SALIVA_RS02045 (SALIVA_0408) rcrP 392117..393931 (+) 1815 WP_014633965.1 ABC transporter ATP-binding protein Regulator
  SALIVA_RS02050 (SALIVA_0409) rcrQ 393921..395699 (+) 1779 WP_014633966.1 ABC transporter ATP-binding protein Regulator
  SALIVA_RS02055 (SALIVA_0410) - 395807..396430 (+) 624 WP_014633967.1 GNAT family N-acetyltransferase -
  SALIVA_RS02060 (SALIVA_0411) - 396578..397201 (+) 624 WP_014633968.1 GTP pyrophosphokinase family protein -
  SALIVA_RS02065 (SALIVA_0412) - 397203..397880 (+) 678 WP_014633969.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67028.63 Da        Isoelectric Point: 5.7447

>NTDB_id=49454 SALIVA_RS02045 WP_014633965.1 392117..393931(+) (rcrP) [Streptococcus salivarius JIM8777]
MFKIFKRLTTKELIMIVLAVIFVCLNVYLNLKIPDYMSDITTLLSTKGTKASDIFAWNTDAPGMRMLLMSFAGFMASVVV
GFLAARTAASFTTRLRDDIFHQVLDFSDAEIKKFSIPSLLTRTTNDITQLQMVLTMGLQVITQGPIMAIWAITKIADKNG
NWLLALLVAVAVIAILMLFLLIMVMPKQRLIQTLTDKLNSVTRESLTGIRVVRAYNAESYQEDKFEKANTDLTQNNLFIG
RSFALLTPVMTAVSSGLTLAIYWIGAHLIEDVKIPTDPTKIAGAMENKVHLFSDMVVYSSYAMQVVMGFMMMIVVFFLLP
RAVVAAGRINEVLDTQSSVSYPENSSEKPNEVGTVEFDDVSFRYSETSEPVLEHVSFKAKKGDTVAFIGSTGSGKSTLVN
LIPRFYDATQGTIKVDGVDVRHYDHETLHNIVGYIPQKAVLFSGDITSNMTMGTSNNSPLDDAKIWEALELAQGKDFVEN
KEGQLKAEVAQAGSNFSGGQKQRLAIARALARKPEILIFDDSFSALDYKTDRKLRQELAEKTQDMTKLIVAQRISTIMDA
DQILVLDQGKVVGQGTHKELLADNEVYQEIAYSQLSKEELENGK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=49454 SALIVA_RS02045 WP_014633965.1 392117..393931(+) (rcrP) [Streptococcus salivarius JIM8777]
ATGTTTAAAATTTTTAAACGTTTAACGACAAAAGAGTTAATCATGATTGTCTTAGCGGTGATTTTTGTTTGCTTGAACGT
CTATCTAAACTTGAAAATTCCAGACTATATGTCTGATATTACGACACTCTTATCAACTAAGGGAACTAAAGCGTCGGATA
TTTTTGCCTGGAATACGGATGCCCCAGGGATGCGAATGCTTTTAATGTCATTTGCAGGCTTTATGGCCTCTGTAGTGGTT
GGTTTCTTAGCTGCTAGAACAGCGGCAAGTTTTACCACCCGTCTTCGTGATGATATCTTTCATCAGGTTCTAGATTTTTC
GGATGCAGAGATTAAGAAATTCTCAATTCCTAGTCTTTTGACCCGTACGACAAATGATATTACCCAATTGCAGATGGTAC
TTACCATGGGGTTACAGGTTATTACACAGGGACCTATCATGGCCATTTGGGCGATTACAAAGATTGCCGATAAAAATGGG
AACTGGCTCCTTGCCTTGCTTGTCGCTGTGGCAGTGATTGCCATTCTCATGCTCTTCCTCTTGATTATGGTTATGCCTAA
GCAACGCTTGATTCAAACTCTGACCGATAAACTGAATAGCGTAACGCGTGAATCTCTTACAGGAATTCGCGTGGTGCGTG
CCTATAACGCCGAAAGTTATCAAGAGGATAAATTTGAAAAGGCCAATACTGATTTGACCCAAAACAATCTCTTTATTGGT
CGTTCTTTTGCCTTACTGACACCGGTAATGACTGCTGTATCAAGTGGTTTGACACTGGCTATTTATTGGATTGGTGCGCA
TTTGATTGAAGATGTTAAGATTCCAACAGATCCAACTAAGATTGCTGGTGCTATGGAAAATAAGGTCCATCTCTTCTCAG
ACATGGTGGTTTATTCATCTTATGCCATGCAGGTTGTTATGGGATTCATGATGATGATTGTTGTTTTCTTCCTTCTTCCA
CGTGCAGTTGTAGCAGCTGGTCGTATCAATGAAGTTCTAGATACCCAATCTTCAGTCTCTTACCCTGAAAATAGTTCTGA
AAAACCTAATGAAGTGGGGACTGTCGAATTTGATGATGTTTCCTTCCGTTATTCTGAAACTTCAGAGCCTGTTTTGGAGC
ATGTTAGCTTCAAAGCTAAAAAAGGTGACACGGTTGCCTTTATTGGTTCGACTGGATCTGGTAAATCAACGCTTGTCAAC
CTTATCCCACGTTTTTATGATGCCACGCAAGGAACGATCAAGGTTGACGGTGTCGATGTGCGACATTATGACCATGAAAC
CTTGCACAATATAGTCGGTTATATTCCACAGAAGGCAGTGCTTTTCTCAGGTGATATCACGTCAAATATGACGATGGGAA
CGAGCAATAACAGTCCTCTTGATGATGCTAAGATTTGGGAAGCTCTCGAATTGGCTCAAGGAAAAGACTTTGTTGAAAAT
AAAGAAGGTCAACTTAAAGCAGAAGTTGCCCAAGCTGGGTCTAACTTCTCAGGTGGACAGAAACAACGTTTGGCTATTGC
GCGTGCCTTGGCACGTAAGCCTGAAATCTTGATTTTCGATGATTCCTTCTCAGCCTTGGACTATAAGACCGATCGTAAGT
TACGTCAAGAATTGGCTGAAAAAACACAAGATATGACCAAGTTGATTGTTGCCCAACGTATCTCTACTATTATGGATGCG
GACCAAATCTTGGTACTTGACCAAGGTAAGGTCGTTGGTCAAGGAACTCACAAGGAACTCTTGGCAGATAATGAGGTTTA
CCAAGAAATTGCCTATTCACAATTGTCTAAGGAGGAGTTAGAAAATGGAAAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-271)

ABC transporter (ABC_tran)

(372-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

68.099

100

0.682

Multiple sequence alignment