Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IM723_RS08455 Genome accession   NZ_CP063275
Coordinates   1648025..1648543 (-) Length   172 a.a.
NCBI ID   WP_002951905.1    Uniprot ID   A0A0P6V0E7
Organism   Streptococcus thermophilus strain DMST-H2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1643025..1653543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM723_RS08435 - 1644934..1645878 (+) 945 WP_002951901.1 magnesium transporter CorA family protein -
  IM723_RS08440 - 1645949..1646620 (+) 672 WP_011681622.1 DUF1129 domain-containing protein -
  IM723_RS08445 - 1646737..1647618 (+) 882 WP_211836883.1 DUF4300 family protein -
  IM723_RS08450 rpsR 1647744..1647983 (-) 240 WP_002945024.1 30S ribosomal protein S18 -
  IM723_RS08455 ssb 1648025..1648543 (-) 519 WP_002951905.1 single-stranded DNA-binding protein Machinery gene
  IM723_RS08460 rpsF 1648555..1648845 (-) 291 WP_002951906.1 30S ribosomal protein S6 -
  IM723_RS08465 - 1649064..1650017 (+) 954 WP_211836884.1 hypothetical protein -
  IM723_RS08470 mutY 1650936..1652087 (+) 1152 WP_211836885.1 A/G-specific adenine glycosylase -
  IM723_RS08475 - 1652296..1652646 (-) 351 WP_232973772.1 hypothetical protein -
  IM723_RS08480 - 1652749..1652976 (-) 228 WP_011681629.1 hypothetical protein -
  IM723_RS08485 - 1652963..1653424 (-) 462 WP_232973773.1 hypothetical protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18680.41 Da        Isoelectric Point: 4.7482

>NTDB_id=494183 IM723_RS08455 WP_002951905.1 1648025..1648543(-) (ssb) [Streptococcus thermophilus strain DMST-H2]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVNRNFKGANGERETDFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRAAREGHSGGSYNVGGFDNSNSFGGGASTGGSFGESQPAQSTPNFGRDESPFGNS
NPMDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=494183 IM723_RS08455 WP_002951905.1 1648025..1648543(-) (ssb) [Streptococcus thermophilus strain DMST-H2]
ATGATTAATAATGTCGTACTCGTTGGTCGCATGACCCGTGATGCGGAACTTCGTTACACACCAAGTAATGTTGCTGTTGC
AACATTCAGCCTTGCGGTTAATCGTAACTTTAAAGGTGCTAATGGTGAACGTGAAACTGACTTTATTAACTGTGTTATCT
GGCGCCAGCAGGCTGAAAATTTGGCTAACTGGGCTAAGAAAGGTGCATTGGTTGGAATTACAGGTCGTATTCAGACCCGT
AACTATGAAAATCAACAAGGTCAACGTGTTTACGTAACTGAAGTTGTCGCTGATAATTTCCAAATGTTGGAAAGCCGTGC
GGCACGTGAAGGTCATAGTGGTGGTTCATACAACGTTGGAGGATTTGATAACTCAAATTCATTCGGTGGTGGAGCTTCCA
CTGGTGGTTCGTTTGGTGAATCACAACCTGCACAATCTACACCAAACTTCGGTCGTGATGAAAGTCCATTTGGTAATTCA
AATCCAATGGATATTTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0P6V0E7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.621

100

0.593
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.301

100

0.587
  ssb Glaesserella parasuis strain SC1401

32.984

100

0.366