Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   IM720_RS19845 Genome accession   NZ_CP063233
Coordinates   4451264..4453489 (-) Length   741 a.a.
NCBI ID   WP_227496811.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain KF1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4446264..4458489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM720_RS19810 (IM720_19810) murB 4446633..4447652 (-) 1020 WP_102625486.1 UDP-N-acetylmuramate dehydrogenase -
  IM720_RS19815 (IM720_19815) - 4447649..4448113 (-) 465 WP_102625485.1 low molecular weight protein-tyrosine-phosphatase -
  IM720_RS19820 (IM720_19820) kdsB 4448113..4448877 (-) 765 WP_024076129.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  IM720_RS19825 (IM720_19825) - 4448874..4449059 (-) 186 WP_003174668.1 Trm112 family protein -
  IM720_RS19830 (IM720_19830) lpxK 4449084..4450094 (-) 1011 WP_102625484.1 tetraacyldisaccharide 4'-kinase -
  IM720_RS19835 (IM720_19835) - 4450094..4450522 (-) 429 WP_102625483.1 ExbD/TolR family protein -
  IM720_RS19840 (IM720_19840) exbB 4450519..4451154 (-) 636 WP_024076132.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  IM720_RS19845 (IM720_19845) comA 4451264..4453489 (-) 2226 WP_227496811.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  IM720_RS19850 (IM720_19850) - 4453625..4454140 (+) 516 WP_024076134.1 DUF2062 domain-containing protein -
  IM720_RS19855 (IM720_19855) - 4454137..4455513 (-) 1377 WP_193689502.1 sensor histidine kinase -
  IM720_RS19860 (IM720_19860) - 4455500..4456228 (-) 729 WP_193689503.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80298.34 Da        Isoelectric Point: 10.5924

>NTDB_id=494005 IM720_RS19845 WP_227496811.1 4451264..4453489(-) (comA) [Pseudomonas fluorescens strain KF1]
MKTGMFALALGLLALRFLPALPPAAGVLAMCVLALMLLPFRSHPLAFFLLGLSWACISAQWALDDRLQPALDGQTRWVEG
RVTGLPQQTSTGVRFELTDGRSPKARLPKRIRVAWHGGPPVRSGERWRLAVTLKRPSGVLNFHGFDHEAWLLAQRIGATG
SVKDGERLAPARNAWRDAVRQRLMAVDAQGREAGLAALVLGDGSGLAAEDWRVLQDTGTVHLLVISGQHIGLLAGLIYGL
VTLLARYGCWPPCWPWLPWACGLAFAAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGAWWPLLLAFNGVLILEPL
ASLQPGFWLSFAAVAVLVLAFGGRLGRWSAWQAWTRPQWLIAIGLFPLLLVLGLPISLSAPLANLFAVPWISLVVLPLAL
LGTVLVAVPFVGEGLLWLAGGALDGLFRALALLAGHLPAWIPAEVPMGYWLVSVAGAVLLLLPRGVPLRPMGWPMLLLAV
FPPREPVPHGQVEVVQLDVGQGQALVLRTRHHTLLYDAGPRSGEVDLGARVVLPSLRKLGVEVLDMMLLSHADADHAGGA
AAIARGLPIRRVVGGETRGLPAFLGTEPCVSGEQWEWDGVSFELWQWPDAISGNPKSCVLQVQAKGERMLLTGDIDRAAE
RAFLASPLAVRTDWLQAPHHGSRSSSSWPFVQRLAPTAVLISRGRGNAFGHPHPQVMERYRALGTQVYDSAEQGAVRVQL
GAFLPPTVARSQRRFWREALP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=494005 IM720_RS19845 WP_227496811.1 4451264..4453489(-) (comA) [Pseudomonas fluorescens strain KF1]
ATGAAGACAGGGATGTTCGCGCTCGCGCTGGGGCTGCTCGCCTTGCGTTTTTTACCCGCGTTGCCGCCTGCCGCGGGGGT
GTTGGCCATGTGCGTGCTGGCGTTGATGCTGCTGCCGTTTCGCAGCCACCCACTGGCGTTCTTTCTGCTGGGCTTGAGTT
GGGCGTGCATCAGCGCGCAGTGGGCGCTGGATGACCGCCTGCAACCGGCGCTCGATGGCCAGACGCGCTGGGTGGAGGGC
CGGGTGACCGGGTTGCCGCAGCAGACCAGCACGGGCGTGCGTTTCGAACTGACCGACGGCCGGTCCCCCAAGGCGCGTTT
ACCCAAGCGTATTCGCGTGGCCTGGCATGGCGGGCCACCGGTGCGCAGTGGGGAGCGCTGGCGCTTGGCCGTGACGCTCA
AGCGGCCATCCGGCGTGCTCAACTTCCATGGCTTTGATCATGAGGCCTGGCTGTTGGCCCAGCGCATCGGTGCCACCGGC
TCGGTGAAAGACGGTGAGCGTTTGGCGCCGGCGCGCAACGCTTGGCGCGACGCGGTCCGCCAACGACTGATGGCTGTGGA
TGCCCAAGGCCGCGAGGCCGGGCTGGCCGCCTTGGTGCTGGGCGATGGCTCGGGGCTGGCCGCCGAGGATTGGCGTGTGT
TGCAGGACACCGGTACGGTGCACCTGCTGGTGATATCCGGCCAGCATATTGGCTTGCTGGCGGGGTTGATCTATGGGCTG
GTCACACTGCTGGCGCGCTACGGTTGCTGGCCCCCCTGCTGGCCGTGGCTGCCTTGGGCGTGTGGCCTGGCATTTGCTGC
CGCGCTGGGCTACGGCCTGCTTGCGGGGTTCGGAGTGCCGGTGCAAAGGGCCTGCGTGATGGTGGGGCTGGTATTGCTGT
GGCGTTTGCGTTTTCGCCATTTGGGCGCCTGGTGGCCATTGTTACTGGCATTTAATGGCGTGCTGATCCTTGAGCCTTTG
GCCAGCCTGCAGCCGGGGTTCTGGTTGTCGTTCGCGGCTGTCGCGGTATTGGTGCTGGCATTCGGTGGGCGTTTGGGGCG
GTGGAGCGCCTGGCAAGCCTGGACCCGTCCCCAGTGGTTGATCGCGATCGGCCTGTTTCCGCTGTTGCTGGTGCTGGGGT
TGCCCATCAGTCTCAGCGCGCCGTTGGCTAACCTGTTTGCCGTGCCATGGATCAGCCTGGTGGTGTTGCCCTTGGCATTG
TTGGGCACTGTGCTGGTGGCGGTGCCCTTTGTGGGGGAGGGGCTGTTATGGCTGGCGGGTGGGGCGCTGGATGGGTTGTT
CCGCGCCTTGGCGTTGCTGGCCGGGCACCTGCCGGCATGGATACCGGCCGAGGTGCCGATGGGCTATTGGCTGGTGAGCG
TCGCGGGTGCAGTGTTACTGCTGTTGCCCAGGGGCGTACCGTTACGACCGATGGGGTGGCCGATGCTGTTGTTGGCGGTG
TTTCCGCCGCGGGAGCCGGTGCCCCATGGGCAGGTTGAGGTGGTGCAACTGGATGTCGGTCAGGGGCAGGCGCTGGTGCT
GCGCACCCGTCATCACACCTTGCTCTACGATGCGGGTCCGCGCTCGGGGGAAGTCGATCTTGGCGCGCGCGTGGTATTGC
CATCATTGAGAAAACTCGGGGTGGAGGTATTGGACATGATGCTGCTCAGCCACGCCGACGCCGACCATGCCGGCGGTGCG
GCGGCTATTGCCCGTGGGCTGCCGATCAGACGGGTAGTCGGAGGCGAAACACGAGGCTTGCCGGCGTTTCTCGGCACTGA
ACCCTGTGTCAGCGGTGAACAGTGGGAGTGGGATGGGGTGTCATTTGAACTGTGGCAGTGGCCAGATGCTATTAGTGGTA
ACCCGAAATCCTGTGTATTACAGGTCCAGGCCAAGGGTGAGCGCATGTTGCTCACGGGGGATATTGATCGCGCCGCCGAG
CGGGCTTTTCTTGCCTCGCCCTTGGCTGTGCGGACCGATTGGTTGCAGGCGCCCCATCATGGCAGCCGCAGTTCTTCGTC
CTGGCCCTTTGTGCAGCGGCTGGCGCCCACGGCGGTGCTGATTTCCAGGGGGCGAGGCAACGCGTTCGGCCACCCCCACC
CCCAGGTGATGGAACGCTACCGGGCACTGGGTACCCAGGTTTATGACAGTGCTGAACAAGGGGCTGTGCGTGTGCAATTG
GGGGCGTTCCTGCCACCGACTGTTGCGCGCAGTCAACGCCGTTTCTGGCGCGAAGCGTTACCGTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-651)

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.083

97.031

0.583
  comA Ralstonia pseudosolanacearum GMI1000

35.842

100

0.379