Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   IM720_RS19840 Genome accession   NZ_CP063233
Coordinates   4450519..4451154 (-) Length   211 a.a.
NCBI ID   WP_024076132.1    Uniprot ID   A0AB36XW30
Organism   Pseudomonas fluorescens strain KF1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4445519..4456154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM720_RS19805 (IM720_19805) - 4445887..4446558 (+) 672 WP_102625487.1 Bax inhibitor-1/YccA family protein -
  IM720_RS19810 (IM720_19810) murB 4446633..4447652 (-) 1020 WP_102625486.1 UDP-N-acetylmuramate dehydrogenase -
  IM720_RS19815 (IM720_19815) - 4447649..4448113 (-) 465 WP_102625485.1 low molecular weight protein-tyrosine-phosphatase -
  IM720_RS19820 (IM720_19820) kdsB 4448113..4448877 (-) 765 WP_024076129.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  IM720_RS19825 (IM720_19825) - 4448874..4449059 (-) 186 WP_003174668.1 Trm112 family protein -
  IM720_RS19830 (IM720_19830) lpxK 4449084..4450094 (-) 1011 WP_102625484.1 tetraacyldisaccharide 4'-kinase -
  IM720_RS19835 (IM720_19835) - 4450094..4450522 (-) 429 WP_102625483.1 ExbD/TolR family protein -
  IM720_RS19840 (IM720_19840) exbB 4450519..4451154 (-) 636 WP_024076132.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  IM720_RS19845 (IM720_19845) comA 4451264..4453489 (-) 2226 WP_227496811.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  IM720_RS19850 (IM720_19850) - 4453625..4454140 (+) 516 WP_024076134.1 DUF2062 domain-containing protein -
  IM720_RS19855 (IM720_19855) - 4454137..4455513 (-) 1377 WP_193689502.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22907.05 Da        Isoelectric Point: 7.4245

>NTDB_id=494004 IM720_RS19840 WP_024076132.1 4450519..4451154(-) (exbB) [Pseudomonas fluorescens strain KF1]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRAHSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=494004 IM720_RS19840 WP_024076132.1 4450519..4451154(-) (exbB) [Pseudomonas fluorescens strain KF1]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGTTCCATCGCCGCACTCGGCATCGTTGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCGGAGCATCTGCTGGGGCAGGTCTGGGGCTGGATCAAGAACA
AGCAACTGGACAAGCAAAAGCTCAAGGAGCTGCGCGCCCATTCACCGCTGGGTGAAATTCTCGCCGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATTGAAGAAGCGGCTGCCCGCGTCATCCATGAGCTGGAGCGCTACAT
CAACGCCCTGGGTACCATCGCGGCCATGGCGCCGTTGCTCGGCCTGCTGGGCACGGTGTTGGGCATGATCGATATTTTCA
GCGCCTTCACGGGCTCCGGCATGACCACCAACGCTGCCGTGCTGGCCGGCGGTATTTCCAAGGCATTGATCACCACGGCC
GCGGGCCTGATGGTCGGTATTCCCTCGGTGTTCTTCCATCGCTTCCTGCAGCGCCGCATCGATGAACTGGTGGTTGGCAT
GGAACAGGAGGCTATCAAGCTGGTGGAAGTGGTGCAGGGCGACCGTGATGTGGACCTGGTCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858