Detailed information    

insolico Bioinformatically predicted

Overview


Name   amiE   Type   Regulator
Locus tag   SSAL_RS02865 Genome accession   NC_017594
Coordinates   566287..567372 (+) Length   361 a.a.
NCBI ID   WP_045001575.1    Uniprot ID   -
Organism   Streptococcus salivarius 57.I     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context


Location: 561287..572372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSAL_RS02850 (Ssal_00622) amiA 561354..563324 (+) 1971 WP_014632817.1 peptide ABC transporter substrate-binding protein Regulator
  SSAL_RS02855 (Ssal_00624) amiC 563858..565351 (+) 1494 WP_014632819.1 ABC transporter permease Regulator
  SSAL_RS02860 (Ssal_00625) amiD 565351..566277 (+) 927 WP_002886846.1 oligopeptide ABC transporter permease OppC Regulator
  SSAL_RS02865 (Ssal_00626) amiE 566287..567372 (+) 1086 WP_045001575.1 ABC transporter ATP-binding protein Regulator
  SSAL_RS02870 (Ssal_00627) amiF 567365..568294 (+) 930 WP_014632821.1 ATP-binding cassette domain-containing protein Regulator
  SSAL_RS02875 (Ssal_00628) - 568345..569130 (-) 786 WP_014632822.1 hypothetical protein -
  SSAL_RS02880 (Ssal_00629) - 569142..569840 (-) 699 WP_002884466.1 ABC transporter ATP-binding protein -
  SSAL_RS02885 (Ssal_00630) - 569845..570222 (-) 378 WP_014632823.1 GntR family transcriptional regulator -
  SSAL_RS02890 (Ssal_00631) - 570404..571198 (+) 795 WP_013990229.1 HAD family hydrolase -
  SSAL_RS02895 (Ssal_00632) - 571191..572009 (+) 819 WP_014632824.1 Cof-type HAD-IIB family hydrolase -

Sequence


Protein


Download         Length: 361 a.a.        Molecular weight: 39917.66 Da        Isoelectric Point: 4.7510

>NTDB_id=49394 SSAL_RS02865 WP_045001575.1 566287..567372(+) (amiE) [Streptococcus salivarius 57.I]
MTENKNVILSARDIVVEFDVRDRVLTAIRGVSLDLVEGEVLALVGESGSGKSVLTKTFTGMLEENGRVASGSINYRGQDL
TKLKSHQDWAPIRGAKIATIFQDPMTSLDPIKTIGSQIVEVIVKHQGKSAKEAKKMAIDYMDKVGIPDAEKRFNEYPFQY
SGGMRQRIVIAIALACRPDVLICDEPTTALDVTIQAQIIDLLKSLKEEYGFSVIFITHDLGVVASIADKVAVMYAGEIIE
YATVEEIFYEPCHPYTWSLLSSLPQLADDKGELFSIPGTPPSLYTPVVGDAFALRSDYAMQIDFEEKAPQFQVSDTHWAK
TWLLHEDAPKVEKPAVIQNLHEKIRANMGFAHLGNEEEGNA

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=49394 SSAL_RS02865 WP_045001575.1 566287..567372(+) (amiE) [Streptococcus salivarius 57.I]
ATGACAGAAAATAAAAATGTAATATTATCGGCTCGCGATATCGTCGTGGAATTTGACGTTCGTGACCGTGTTTTGACAGC
TATTCGAGGAGTTTCCCTTGATTTGGTTGAAGGTGAAGTTTTAGCCTTGGTTGGTGAGTCTGGTTCAGGTAAATCAGTGT
TGACTAAAACTTTCACAGGGATGCTTGAAGAAAATGGTCGTGTAGCTAGCGGTTCTATTAACTATCGTGGCCAAGATTTG
ACCAAGCTTAAGAGTCACCAAGATTGGGCACCTATTCGTGGAGCTAAGATTGCGACTATCTTCCAAGATCCTATGACCAG
TCTTGACCCAATTAAGACTATCGGTAGCCAAATTGTTGAAGTCATTGTTAAACACCAAGGAAAATCAGCCAAAGAAGCTA
AAAAAATGGCCATTGATTATATGGACAAGGTTGGTATTCCTGATGCTGAAAAACGTTTCAACGAATATCCTTTCCAATAC
TCTGGTGGGATGCGTCAACGTATCGTCATTGCCATTGCCTTGGCTTGTCGTCCTGATGTCCTTATCTGTGACGAGCCAAC
AACTGCCCTTGACGTGACCATTCAAGCTCAAATCATTGACCTCTTGAAATCACTCAAAGAGGAGTACGGTTTCTCAGTGA
TTTTCATTACCCATGACCTTGGTGTGGTAGCAAGTATCGCTGACAAGGTTGCTGTTATGTATGCTGGTGAAATCATCGAG
TACGCAACTGTTGAGGAAATTTTCTATGAGCCTTGTCACCCATACACGTGGAGCTTGCTTTCAAGCTTGCCACAGTTGGC
TGACGATAAGGGTGAGCTTTTCTCAATTCCAGGGACACCACCATCACTTTATACACCAGTTGTTGGAGATGCCTTTGCCT
TGCGTTCAGACTATGCTATGCAGATTGACTTTGAGGAAAAAGCACCACAATTCCAAGTTTCAGATACTCACTGGGCTAAG
ACCTGGCTCTTACATGAGGATGCACCAAAAGTTGAAAAACCTGCGGTTATCCAAAATCTACATGAAAAAATCCGTGCTAA
TATGGGATTTGCACATTTAGGAAATGAGGAGGAAGGCAATGCCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

99.169

100

0.992

  amiE Streptococcus thermophilus LMG 18311

96.399

100

0.964

  amiE Streptococcus thermophilus LMD-9

96.399

100

0.964

  oppD Streptococcus mutans UA159

54.441

96.676

0.526


Multiple sequence alignment