Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   SSAL_RS02870 Genome accession   NC_017594
Coordinates   567365..568294 (+) Length   309 a.a.
NCBI ID   WP_014632821.1    Uniprot ID   -
Organism   Streptococcus salivarius 57.I     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 562365..573294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSAL_RS02855 (Ssal_00624) amiC 563858..565351 (+) 1494 WP_014632819.1 ABC transporter permease Regulator
  SSAL_RS02860 (Ssal_00625) amiD 565351..566277 (+) 927 WP_002886846.1 oligopeptide ABC transporter permease OppC Regulator
  SSAL_RS02865 (Ssal_00626) amiE 566287..567372 (+) 1086 WP_045001575.1 ABC transporter ATP-binding protein Regulator
  SSAL_RS02870 (Ssal_00627) amiF 567365..568294 (+) 930 WP_014632821.1 ATP-binding cassette domain-containing protein Regulator
  SSAL_RS02875 (Ssal_00628) - 568345..569130 (-) 786 WP_014632822.1 hypothetical protein -
  SSAL_RS02880 (Ssal_00629) - 569142..569840 (-) 699 WP_002884466.1 ABC transporter ATP-binding protein -
  SSAL_RS02885 (Ssal_00630) - 569845..570222 (-) 378 WP_014632823.1 GntR family transcriptional regulator -
  SSAL_RS02890 (Ssal_00631) - 570404..571198 (+) 795 WP_013990229.1 HAD family hydrolase -
  SSAL_RS02895 (Ssal_00632) - 571191..572009 (+) 819 WP_014632824.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35046.11 Da        Isoelectric Point: 6.5101

>NTDB_id=49395 SSAL_RS02870 WP_014632821.1 567365..568294(+) (amiF) [Streptococcus salivarius 57.I]
MPEKLVEVKDVEISFGEGSKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGHLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLYNFHLYKDEEDRKAKIKEIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVELRPGHFVWGNKAEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=49395 SSAL_RS02870 WP_014632821.1 567365..568294(+) (amiF) [Streptococcus salivarius 57.I]
ATGCCTGAGAAGTTAGTTGAAGTAAAAGATGTGGAGATTTCCTTCGGTGAAGGAAGCAAGAAATTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTTTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACTACTATCGGTCGTG
CCATTATTGGTCTGAATGATACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAAATCAATGGGCACTTATCTCACTCT
GAGAAAAACGACCTTATCCGTCGTATTCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCAACAGTTGA
TTATATCTTGTCTGAGGGCTTGTATAACTTCCATCTCTATAAGGATGAGGAAGATCGTAAAGCCAAAATCAAGGAAATCA
TCAAAGAAGTGGGACTTCTTGAGGAACACTTGACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATCGGT
ATTGCGCGTTCCTTGGTTATGCAACCTGACTTGGTCATCGCTGACGAACCAATTTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAGTTTTGAACTTGCTTAAGAAATTCCAAAAAGAGTTGGGATTGACCTACCTCTTTATCGCTCACGACTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATTTACAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAACTCTACAAC
AATCCTATCCACCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGACCCAATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACATGACTATTCTGTTGATAAACCAGAAATGGTTGAACTACGTCCAGGACACTTCGTTT
GGGGTAACAAAGCCGAAATCGAGACTTATCGTAAAGAACAAAGTAAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(26-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

99.029

100

0.99
  amiF Streptococcus thermophilus LMG 18311

98.382

100

0.984
  amiF Streptococcus thermophilus LMD-9

98.058

100

0.981

Multiple sequence alignment