Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   SSAL_RS02860 Genome accession   NC_017594
Coordinates   565351..566277 (+) Length   308 a.a.
NCBI ID   WP_002886846.1    Uniprot ID   A0A0F3HAC7
Organism   Streptococcus salivarius 57.I     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 560351..571277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSAL_RS02850 (Ssal_00622) amiA 561354..563324 (+) 1971 WP_014632817.1 peptide ABC transporter substrate-binding protein Regulator
  SSAL_RS02855 (Ssal_00624) amiC 563858..565351 (+) 1494 WP_014632819.1 ABC transporter permease Regulator
  SSAL_RS02860 (Ssal_00625) amiD 565351..566277 (+) 927 WP_002886846.1 oligopeptide ABC transporter permease OppC Regulator
  SSAL_RS02865 (Ssal_00626) amiE 566287..567372 (+) 1086 WP_045001575.1 ABC transporter ATP-binding protein Regulator
  SSAL_RS02870 (Ssal_00627) amiF 567365..568294 (+) 930 WP_014632821.1 ATP-binding cassette domain-containing protein Regulator
  SSAL_RS02875 (Ssal_00628) - 568345..569130 (-) 786 WP_014632822.1 hypothetical protein -
  SSAL_RS02880 (Ssal_00629) - 569142..569840 (-) 699 WP_002884466.1 ABC transporter ATP-binding protein -
  SSAL_RS02885 (Ssal_00630) - 569845..570222 (-) 378 WP_014632823.1 GntR family transcriptional regulator -
  SSAL_RS02890 (Ssal_00631) - 570404..571198 (+) 795 WP_013990229.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34607.77 Da        Isoelectric Point: 9.7054

>NTDB_id=49393 SSAL_RS02860 WP_002886846.1 565351..566277(+) (amiD) [Streptococcus salivarius 57.I]
MASIDKSKFQFVKRDDFASETIDAPAYSYWKSVMRQFFKKKSTVVMLGILIAIVLMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDSNGKSLFDSVWFGARNSILIAVIATFLNVVIGLLVGAVWGISKTFDMIMMEIYNIISNIPALLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRTLGTPTAKIVVKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=49393 SSAL_RS02860 WP_002886846.1 565351..566277(+) (amiD) [Streptococcus salivarius 57.I]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCAGCTTA
TTCTTACTGGAAATCAGTGATGCGTCAATTCTTTAAAAAGAAATCAACAGTAGTAATGTTGGGGATCTTGATTGCCATCG
TTTTGATGAGTTTCATCTATCCAATGTTCTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAATGCTCAATACTGGTTCGGTACTGACAGTAATGGTAAGTCCCTCTTTGATAGTGTTTGGTTTGGAGC
TCGTAATTCTATCCTTATTGCTGTTATCGCTACCTTCCTTAACGTTGTTATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCTGCCCTCCTTGTAGTTATCGTC
TTGACTTACTCATTGGGTGCTGGTTTTTGGAATATGATCTTTGCCATGACTGTCACAGGTTGGATTGGTATTGCCTATAC
CATTCGTATTCAAATCATGCGTTATCGTGATTTGGAGTACAACTTGGCTTCTCGTACACTGGGAACGCCAACTGCTAAGA
TTGTGGTTAAAAACATCATGCCGCAACTTGTGTCAGTTATCGTGACTATGGCTAGTCAGCTTTTGCCAGGATTTATCTCT
TACGAAGCCTTCCTTTCATACTTTGGTTTGGGGCTTCCCGTTACGACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCTTATCTCTTCTGGATTCCATTGACTACCTTGATCCTCGTTTCCCTTGCTCTCTTTATTG
TCGGTCAAAACTTGGCGGATGCCAGCGACCCACGTACGCATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F3HAC7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

98.377

100

0.984
  amiD Streptococcus thermophilus LMG 18311

97.403

100

0.974
  amiD Streptococcus thermophilus LMD-9

97.403

100

0.974

Multiple sequence alignment