Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   SSAL_RS02000 Genome accession   NC_017594
Coordinates   388139..389176 (+) Length   345 a.a.
NCBI ID   WP_045001493.1    Uniprot ID   -
Organism   Streptococcus salivarius 57.I     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 383139..394176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSAL_RS10315 (Ssal_00426) - 384955..385080 (+) 126 WP_002884447.1 hypothetical protein -
  SSAL_RS01975 (Ssal_00427) - 385098..385706 (+) 609 WP_013991073.1 DUF4230 domain-containing protein -
  SSAL_RS10180 (Ssal_00428) - 386283..386450 (+) 168 WP_014632697.1 hypothetical protein -
  SSAL_RS01985 (Ssal_00429) - 386631..386930 (-) 300 WP_014632698.1 hypothetical protein -
  SSAL_RS01990 (Ssal_00430) - 386927..387346 (-) 420 WP_014632699.1 HIT family protein -
  SSAL_RS01995 (Ssal_00431) pptA 387411..388142 (+) 732 WP_014632700.1 ABC transporter ATP-binding protein Regulator
  SSAL_RS02000 (Ssal_00432) pptB 388139..389176 (+) 1038 WP_045001493.1 ABC transporter permease Regulator
  SSAL_RS02005 (Ssal_00433) - 389234..390025 (+) 792 WP_002884270.1 cell cycle regulator CcrZ -
  SSAL_RS02010 (Ssal_00434) trmB 390035..390676 (+) 642 WP_003096317.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  SSAL_RS02020 (Ssal_00435) - 390893..392074 (-) 1182 WP_014632702.1 NAD(P)/FAD-dependent oxidoreductase -
  SSAL_RS02025 (Ssal_00436) ilvD 392202..393905 (+) 1704 WP_002884316.1 dihydroxy-acid dehydratase -

Sequence


Protein


Download         Length: 345 a.a.        Molecular weight: 40084.70 Da        Isoelectric Point: 10.6436

>NTDB_id=49388 SSAL_RS02000 WP_045001493.1 388139..389176(+) (pptB) [Streptococcus salivarius 57.I]
MIAKLFMERSKRFNARCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLRHFPKNPWAIILGLLVLCLLLPFWGNIATYLE
PADKHYLLVKEEEVLDHVKKATGRAFRFWVIVQTLIFILVIPLFLALGLPVWGVILVAVAMAILKYFIFQKKAQPFYKQS
GLNWTKAIAGENKRQQSILKFFSLFTNVKGITSSVKRRAYLDAILKRTKKDKEHTWYNLYLRAFLRSGDYFALSLRLFAL
TLLVIFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQRMANLMPVGKDMQVSNLKRLITQIVLVLTLVQAICLFDLKF
SLILVGMMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=49388 SSAL_RS02000 WP_045001493.1 388139..389176(+) (pptB) [Streptococcus salivarius 57.I]
ATGATAGCTAAGCTATTTATGGAGCGTAGCAAGCGATTCAATGCCCGCTGTGCTAAGTATAGCCGCTACGTCTTTAATGA
TCACTTTATCTTGGTTCTTCTCTTTCTGTTAGGTTTTGTCTTGGTTCAGTATAGCCAGTTGCTTCGACATTTTCCAAAGA
ATCCGTGGGCAATCATTCTTGGTTTGCTAGTGCTTTGTCTTCTATTGCCTTTCTGGGGGAATATTGCGACTTATTTAGAG
CCAGCTGATAAGCATTACCTTTTGGTGAAGGAAGAAGAGGTGTTAGACCATGTTAAGAAGGCAACAGGGCGTGCTTTTAG
ATTTTGGGTAATCGTACAAACCCTGATTTTTATTTTGGTTATTCCCCTCTTTTTAGCCTTGGGACTTCCAGTTTGGGGAG
TTATCCTTGTAGCTGTGGCTATGGCTATTCTTAAGTACTTTATTTTCCAGAAAAAGGCTCAACCTTTTTATAAGCAGTCT
GGACTGAATTGGACTAAGGCTATTGCAGGAGAAAATAAGCGTCAACAATCGATTCTGAAGTTCTTTTCACTCTTTACCAA
TGTTAAGGGGATTACGTCAAGTGTTAAACGTCGTGCTTATTTGGATGCTATTCTCAAACGTACAAAGAAAGACAAGGAAC
ATACCTGGTACAATCTTTACCTAAGAGCCTTCTTGCGTTCTGGAGATTACTTTGCCCTTAGCCTACGCCTGTTTGCCCTA
ACGCTTTTAGTTATCTTTTTGGTTCCTGAAAAATGGCTGGCTATGGTGCTTGTGGTTGTTTTTGACTACCTCTTGCTCTT
CCAGCTCACGGCACTTAAATCGCACTTTGCTTATCAGAGAATGGCTAACCTTATGCCGGTTGGAAAAGACATGCAGGTAA
GCAATCTTAAGCGCTTGATTACACAGATTGTACTTGTGCTGACTCTGGTACAGGCTATTTGTCTCTTCGACCTTAAGTTT
AGTCTGATTTTGGTTGGAATGATGCTAGTTCTGAGCCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

98.256

99.71

0.98

  pptB Streptococcus thermophilus LMD-9

92.442

99.71

0.922


Multiple sequence alignment