Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SSAL_RS01315 Genome accession   NC_017594
Coordinates   246402..246920 (+) Length   172 a.a.
NCBI ID   WP_013991184.1    Uniprot ID   -
Organism   Streptococcus salivarius 57.I     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 241402..251920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSAL_RS10350 - 241637..242038 (+) 402 WP_004183523.1 DUF6608 family protein -
  SSAL_RS01295 (Ssal_00264) - 242059..242268 (+) 210 WP_014632597.1 hypothetical protein -
  SSAL_RS01300 (Ssal_00266) mutY 242617..243768 (-) 1152 WP_014632598.1 A/G-specific adenine glycosylase -
  SSAL_RS01305 (Ssal_00268) - 244946..245899 (-) 954 WP_014632599.1 hypothetical protein -
  SSAL_RS01310 (Ssal_00269) rpsF 246100..246390 (+) 291 WP_002884188.1 30S ribosomal protein S6 -
  SSAL_RS01315 (Ssal_00270) ssb 246402..246920 (+) 519 WP_013991184.1 single-stranded DNA-binding protein Machinery gene
  SSAL_RS01320 (Ssal_00271) rpsR 246962..247201 (+) 240 WP_000068665.1 30S ribosomal protein S18 -
  SSAL_RS01325 - 247325..248206 (-) 882 Protein_251 DUF4300 family protein -
  SSAL_RS01330 (Ssal_00273) - 248317..248988 (-) 672 WP_014632601.1 DUF1129 domain-containing protein -
  SSAL_RS01335 (Ssal_00275) - 249058..250002 (-) 945 WP_013991181.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18567.29 Da        Isoelectric Point: 4.9163

>NTDB_id=49383 SSAL_RS01315 WP_013991184.1 246402..246920(+) (ssb) [Streptococcus salivarius 57.I]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVSRNFKGANGERETDFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRAAREGHSGGSYNAGGFDNSNSFGGGASTGGSFGGSQPAQSTPNFGRDESPFGNS
NPMDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=49383 SSAL_RS01315 WP_013991184.1 246402..246920(+) (ssb) [Streptococcus salivarius 57.I]
ATGATTAATAATGTCGTACTCGTTGGTCGCATGACCCGTGATGCGGAACTTCGTTATACACCAAGTAACGTTGCTGTTGC
AACATTCAGCCTTGCGGTTAGTCGTAACTTCAAGGGTGCTAATGGTGAACGTGAAACTGACTTTATTAACTGTGTTATCT
GGCGCCAGCAAGCTGAAAATTTGGCTAACTGGGCTAAGAAAGGCGCATTGATTGGAATTACAGGTCGTATTCAGACTCGT
AACTATGAAAATCAACAAGGTCAACGTGTTTACGTAACTGAAGTTGTCGCTGATAATTTCCAAATGTTGGAAAGCCGTGC
GGCACGTGAAGGTCACAGTGGTGGTTCTTACAACGCTGGAGGATTTGATAATTCAAATTCATTCGGTGGAGGAGCTTCAA
CTGGTGGTTCATTTGGTGGATCACAACCTGCACAATCTACACCAAACTTCGGTCGTGACGAGAGTCCATTTGGTAATTCA
AATCCAATGGATATTTCAGATGACGATCTCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

57.471

100

0.581
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.763

100

0.581
  ssb Glaesserella parasuis strain SC1401

32.984

100

0.366

Multiple sequence alignment