Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   INR79_RS16425 Genome accession   NZ_CP063199
Coordinates   3639118..3639750 (+) Length   210 a.a.
NCBI ID   WP_004399871.1    Uniprot ID   A0AAV2VTT7
Organism   Vibrio sp. SCSIO 43132     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3634118..3644750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INR79_RS16400 (INR79_16400) - 3634534..3635130 (-) 597 WP_223095127.1 LysE family translocator -
  INR79_RS16405 (INR79_16405) - 3635252..3636643 (+) 1392 WP_022592291.1 PLP-dependent aminotransferase family protein -
  INR79_RS16410 (INR79_16410) - 3636640..3637662 (+) 1023 WP_223095129.1 hydrolase -
  INR79_RS16415 (INR79_16415) - 3637694..3637906 (+) 213 WP_004399873.1 YheU family protein -
  INR79_RS16420 (INR79_16420) - 3638005..3638874 (+) 870 WP_022551727.1 phosphoribulokinase -
  INR79_RS16425 (INR79_16425) crp 3639118..3639750 (+) 633 WP_004399871.1 cAMP-activated global transcriptional regulator CRP Regulator
  INR79_RS16430 (INR79_16430) rlmB 3639823..3640563 (-) 741 WP_022612621.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  INR79_RS16435 (INR79_16435) rnr 3640581..3643040 (-) 2460 WP_223095131.1 ribonuclease R -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23639.39 Da        Isoelectric Point: 7.4009

>NTDB_id=493818 INR79_RS16425 WP_004399871.1 3639118..3639750(+) (crp) [Vibrio sp. SCSIO 43132]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKTPCEVAEISFKKFRQLIQVNPDILMRLSAQMANRLQTTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=493818 INR79_RS16425 WP_004399871.1 3639118..3639750(+) (crp) [Vibrio sp. SCSIO 43132]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCATCAAA
AAGTACTCTGATTCATGCTGGTGAAAAGGCAGAGACCCTGTACTACATTGTGAAAGGTTCTGTTGCCGTACTGATCAAGG
ATGAAGAAGGCAAAGAAATGATCTTGTCTTACCTCAACCAAGGTGATTTTATCGGCGAACTTGGTCTGTTCGAAGAAGAC
CAGGAACGTACCGCTTGGGTACGTGCGAAAACCCCGTGTGAAGTAGCAGAAATCTCATTTAAGAAGTTCCGTCAGCTGAT
TCAGGTTAACCCTGATATCCTAATGCGCCTTTCTGCGCAAATGGCGAACCGTCTTCAAACAACAAGCCAGAAAGTGGGCG
ACCTTGCATTCCTAGACGTAACAGGTCGTATCGCTCAAACGCTTCTGAACCTTGCGAAGCAACCAGACGCAATGACTCAC
CCAGACGGTATGCAAATTAAGATTACCCGTCAGGAAATCGGTCAAATCGTTGGCTGTTCTCGTGAAACAGTAGGTCGTAT
CCTGAAAATGCTGGAAGAGCAAAACCTCATCTCAGCACACGGTAAGACTATCGTTGTTTACGGCACTCGCTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467