Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   IMZ24_RS07475 Genome accession   NZ_CP063157
Coordinates   1438536..1438871 (-) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain GY65     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1433536..1443871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMZ24_RS07425 (IMZ24_07425) comGC 1433768..1434034 (+) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene
  IMZ24_RS07430 (IMZ24_07430) comGD 1434024..1434461 (+) 438 WP_007612572.1 competence type IV pilus minor pilin ComGD Machinery gene
  IMZ24_RS07435 (IMZ24_07435) comGE 1434445..1434759 (+) 315 WP_032874016.1 competence type IV pilus minor pilin ComGE Machinery gene
  IMZ24_RS07440 (IMZ24_07440) comGF 1434668..1435168 (+) 501 WP_223204419.1 competence type IV pilus minor pilin ComGF -
  IMZ24_RS07445 (IMZ24_07445) comGG 1435169..1435546 (+) 378 WP_032874019.1 competence type IV pilus minor pilin ComGG Machinery gene
  IMZ24_RS07450 (IMZ24_07450) - 1435603..1435782 (+) 180 WP_022552966.1 YqzE family protein -
  IMZ24_RS07455 (IMZ24_07455) - 1435823..1436152 (-) 330 WP_032874021.1 DUF3889 domain-containing protein -
  IMZ24_RS07460 (IMZ24_07460) tapA 1436411..1437082 (+) 672 WP_032874023.1 amyloid fiber anchoring/assembly protein TapA -
  IMZ24_RS07465 (IMZ24_07465) sipW 1437054..1437638 (+) 585 WP_032874025.1 signal peptidase I SipW -
  IMZ24_RS07470 (IMZ24_07470) tasA 1437703..1438488 (+) 786 WP_032874027.1 biofilm matrix protein TasA -
  IMZ24_RS07475 (IMZ24_07475) sinR 1438536..1438871 (-) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  IMZ24_RS07480 (IMZ24_07480) sinI 1438905..1439078 (-) 174 WP_032874029.1 anti-repressor SinI Regulator
  IMZ24_RS07485 (IMZ24_07485) - 1439255..1440049 (-) 795 WP_007612541.1 YqhG family protein -
  IMZ24_RS07490 (IMZ24_07490) - 1440071..1441741 (-) 1671 WP_032874031.1 DEAD/DEAH box helicase -
  IMZ24_RS07495 (IMZ24_07495) gcvT 1442164..1443264 (+) 1101 WP_032874033.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=493570 IMZ24_RS07475 WP_003153104.1 1438536..1438871(-) (sinR) [Bacillus velezensis strain GY65]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=493570 IMZ24_RS07475 WP_003153104.1 1438536..1438871(-) (sinR) [Bacillus velezensis strain GY65]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991