Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   IMZ18_RS21625 Genome accession   NZ_CP063151
Coordinates   4090413..4091804 (+) Length   463 a.a.
NCBI ID   WP_014481052.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain CMIN-4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4085413..4096804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMZ18_RS21600 (IMZ18_21600) - 4085572..4086564 (-) 993 WP_014481056.1 LCP family protein -
  IMZ18_RS21605 (IMZ18_21605) - 4086564..4087217 (-) 654 WP_014481055.1 YigZ family protein -
  IMZ18_RS21610 (IMZ18_21610) degS 4087434..4088591 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  IMZ18_RS21615 (IMZ18_21615) degU 4088674..4089363 (+) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  IMZ18_RS21620 (IMZ18_21620) fakBA 4089461..4090306 (+) 846 WP_014481053.1 DegV family protein -
  IMZ18_RS21625 (IMZ18_21625) comFA 4090413..4091804 (+) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  IMZ18_RS21630 (IMZ18_21630) comFB 4091864..4092160 (+) 297 WP_003227989.1 late competence protein ComFB -
  IMZ18_RS21635 (IMZ18_21635) comFC 4092124..4092846 (+) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  IMZ18_RS21640 (IMZ18_21640) yvyF 4092919..4093338 (+) 420 WP_014481050.1 TIGR03826 family flagellar region protein -
  IMZ18_RS21645 (IMZ18_21645) flgM 4093419..4093685 (+) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  IMZ18_RS21650 (IMZ18_21650) flgN 4093701..4094183 (+) 483 WP_014481048.1 flagellar protein FlgN -
  IMZ18_RS21655 (IMZ18_21655) flgK 4094202..4095725 (+) 1524 WP_014481047.1 flagellar hook-associated protein FlgK -
  IMZ18_RS21660 (IMZ18_21660) flgL 4095736..4096632 (+) 897 WP_014481046.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52543.49 Da        Isoelectric Point: 9.7976

>NTDB_id=493512 IMZ18_RS21625 WP_014481052.1 4090413..4091804(+) (comFA) [Bacillus subtilis subsp. subtilis strain CMIN-4]
MNVPVEKNSSFSRELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDQRYYSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWEEENEPNWQSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=493512 IMZ18_RS21625 WP_014481052.1 4090413..4091804(+) (comFA) [Bacillus subtilis subsp. subtilis strain CMIN-4]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCTAGAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGGGATATAGATGTAATAGGTGCGGCCAAACTGATCAGCGGTATTATTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGGAAGAGGAAAATGA
ACCAAACTGGCAGTCAATTAAACTGACATGGGACGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGGCT
CAAGGCTGCCTTTCAGGGGGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCCGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(326-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

98.056

100

0.981