Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   IMZ18_RS21615 Genome accession   NZ_CP063151
Coordinates   4088674..4089363 (+) Length   229 a.a.
NCBI ID   WP_014481054.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain CMIN-4     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 4083674..4094363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMZ18_RS21590 (IMZ18_21590) - 4084006..4084461 (-) 456 WP_014481057.1 hypothetical protein -
  IMZ18_RS21595 (IMZ18_21595) - 4084510..4084965 (-) 456 WP_041516563.1 hypothetical protein -
  IMZ18_RS21600 (IMZ18_21600) - 4085572..4086564 (-) 993 WP_014481056.1 LCP family protein -
  IMZ18_RS21605 (IMZ18_21605) - 4086564..4087217 (-) 654 WP_014481055.1 YigZ family protein -
  IMZ18_RS21610 (IMZ18_21610) degS 4087434..4088591 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  IMZ18_RS21615 (IMZ18_21615) degU 4088674..4089363 (+) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  IMZ18_RS21620 (IMZ18_21620) fakBA 4089461..4090306 (+) 846 WP_014481053.1 DegV family protein -
  IMZ18_RS21625 (IMZ18_21625) comFA 4090413..4091804 (+) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  IMZ18_RS21630 (IMZ18_21630) comFB 4091864..4092160 (+) 297 WP_003227989.1 late competence protein ComFB -
  IMZ18_RS21635 (IMZ18_21635) comFC 4092124..4092846 (+) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  IMZ18_RS21640 (IMZ18_21640) yvyF 4092919..4093338 (+) 420 WP_014481050.1 TIGR03826 family flagellar region protein -
  IMZ18_RS21645 (IMZ18_21645) flgM 4093419..4093685 (+) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  IMZ18_RS21650 (IMZ18_21650) flgN 4093701..4094183 (+) 483 WP_014481048.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25848.54 Da        Isoelectric Point: 5.9446

>NTDB_id=493511 IMZ18_RS21615 WP_014481054.1 4088674..4089363(+) (degU) [Bacillus subtilis subsp. subtilis strain CMIN-4]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKINVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=493511 IMZ18_RS21615 WP_014481054.1 4088674..4089363(+) (degU) [Bacillus subtilis subsp. subtilis strain CMIN-4]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATCAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996