Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   IMZ18_RS16365 Genome accession   NZ_CP063151
Coordinates   3049021..3050169 (-) Length   382 a.a.
NCBI ID   WP_014475800.1    Uniprot ID   A0A0D1KXJ1
Organism   Bacillus subtilis subsp. subtilis strain CMIN-4     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3044021..3055169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMZ18_RS16335 (IMZ18_16335) yclO 3044735..3045682 (-) 948 WP_014475805.1 petrobactin ABC transporter permease YclO -
  IMZ18_RS16340 (IMZ18_16340) ceuB 3045675..3046625 (-) 951 WP_014475804.1 petrobactin ABC transporter permease YclN Machinery gene
  IMZ18_RS16345 (IMZ18_16345) thrD 3047015..3048379 (+) 1365 WP_014478832.1 aspartate kinase -
  IMZ18_RS16350 (IMZ18_16350) yczN 3048532..3048645 (+) 114 WP_014478831.1 YjcZ family sporulation protein -
  IMZ18_RS16355 (IMZ18_16355) yczM 3048727..3048816 (+) 90 WP_015482794.1 YjcZ family sporulation protein -
  IMZ18_RS16360 (IMZ18_16360) phrC 3048915..3049037 (-) 123 WP_003224994.1 phosphatase RapC inhibitor PhrC Regulator
  IMZ18_RS16365 (IMZ18_16365) rapC 3049021..3050169 (-) 1149 WP_014475800.1 response regulator aspartate phosphatase RapC Regulator
  IMZ18_RS16370 (IMZ18_16370) yclK 3050332..3051753 (-) 1422 WP_072173981.1 two-component system sensor histidine kinase YclK -
  IMZ18_RS16375 (IMZ18_16375) yclJ 3051740..3052423 (-) 684 WP_003246532.1 two-component system response regulator YclJ -
  IMZ18_RS16380 (IMZ18_16380) yclI 3052636..3054096 (+) 1461 WP_014478827.1 ABC transporter permease -
  IMZ18_RS16385 (IMZ18_16385) yclH 3054112..3054792 (+) 681 WP_014478826.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45649.65 Da        Isoelectric Point: 4.9618

>NTDB_id=493493 IMZ18_RS16365 WP_014475800.1 3049021..3050169(-) (rapC) [Bacillus subtilis subsp. subtilis strain CMIN-4]
MKSGVIPSSAVGQKINEWYRYIRTFSVPDAEVLKAEIQQELKHMQHDSNLLLYYSLMEFRHQLMLDYLEPLEKLNIEDQP
SLSELSRNIDSNQADLKGLLDYYVNFFRGMYEFDKREFISAITYYKQAEKKLSFVADHIERAEFYFKIAEAYYYMKQTYF
SLINIKNAYEIYVEQETYNVRIIQCHFVFGVNLMDERNFEQAARHFKLALNMAQAEQKAQLVGRAYYNLGLCYYNQDLLD
PAIDYFEKAVSTFESSRIVNSLPQAYFLITLIYYKQGKHDKASEYHKRGYEYAKETDDADYAVKFEFLQSLYQDQPNEEG
IERCFQYLKNKNMYADIEDLALEVAKYYYEQKWFKLSASYFLQVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=493493 IMZ18_RS16365 WP_014475800.1 3049021..3050169(-) (rapC) [Bacillus subtilis subsp. subtilis strain CMIN-4]
ATGAAGAGCGGGGTAATTCCTTCTTCAGCGGTCGGTCAAAAAATTAACGAGTGGTACAGATATATCCGGACATTCAGCGT
GCCGGATGCCGAAGTGTTAAAAGCTGAAATCCAGCAGGAACTGAAACACATGCAGCATGATTCCAACTTGCTGCTTTATT
ATTCACTAATGGAATTCCGGCACCAGCTTATGCTGGATTATCTTGAGCCGTTAGAGAAATTAAATATCGAAGACCAGCCA
AGCCTGTCTGAATTATCAAGAAACATTGACAGCAACCAGGCAGATCTCAAAGGGCTGCTCGACTATTACGTGAATTTTTT
TCGCGGGATGTATGAATTTGATAAGCGGGAATTTATTTCTGCCATTACATACTATAAACAGGCGGAGAAAAAGCTCTCCT
TTGTCGCAGACCATATTGAACGGGCTGAATTTTATTTTAAAATCGCGGAAGCTTATTATTATATGAAGCAAACGTATTTT
TCATTGATTAATATAAAAAACGCCTATGAAATTTACGTGGAGCAGGAAACCTATAATGTGAGAATCATTCAGTGCCATTT
CGTGTTCGGGGTCAACCTGATGGATGAAAGAAATTTCGAACAAGCCGCACGCCATTTCAAATTGGCGCTCAACATGGCCC
AAGCGGAACAAAAAGCCCAGCTGGTTGGAAGAGCATACTACAATCTCGGATTATGCTATTACAATCAAGACCTTCTAGAC
CCTGCCATTGATTACTTTGAAAAAGCGGTCTCCACATTTGAAAGCAGCAGGATCGTCAATTCTCTCCCGCAAGCCTATTT
TTTAATCACCCTGATTTATTATAAACAGGGAAAACATGATAAAGCTTCGGAATATCACAAGCGGGGCTATGAATATGCTA
AAGAAACAGACGATGCAGACTATGCCGTAAAATTCGAGTTTTTGCAATCCCTATATCAGGATCAGCCCAATGAAGAAGGA
ATCGAACGATGTTTCCAATACTTAAAAAATAAAAATATGTACGCTGATATAGAGGATTTAGCCCTAGAAGTAGCAAAATA
TTACTATGAACAGAAATGGTTTAAACTGTCTGCTTCCTACTTTCTACAAGTTGAAGAGGCAAGAAAACAAATACAAAGGA
GTGAAGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(223-294)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KXJ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

99.738

100

0.997
  rapF Bacillus subtilis subsp. subtilis str. 168

57.105

99.476

0.568