Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   IMZ18_RS02300 Genome accession   NZ_CP063151
Coordinates   420911..421555 (+) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain CMIN-4     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 415911..426555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMZ18_RS02270 (IMZ18_02270) - 416262..416630 (-) 369 WP_014477834.1 hypothetical protein -
  IMZ18_RS02275 (IMZ18_02275) - 416744..416869 (-) 126 WP_003228793.1 hypothetical protein -
  IMZ18_RS02280 (IMZ18_02280) degQ 417091..417231 (+) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  IMZ18_RS02285 (IMZ18_02285) - 417416..418279 (+) 864 WP_014480705.1 polyprenyl synthetase family protein -
  IMZ18_RS02290 (IMZ18_02290) comX 418281..418502 (+) 222 WP_014480704.1 competence pheromone ComX -
  IMZ18_RS02295 (IMZ18_02295) comP 418518..420830 (+) 2313 WP_014480703.1 sensor histidine kinase Regulator
  IMZ18_RS02300 (IMZ18_02300) comA 420911..421555 (+) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  IMZ18_RS02305 (IMZ18_02305) yuxO 421574..421954 (+) 381 WP_017695528.1 hotdog fold thioesterase -
  IMZ18_RS02310 (IMZ18_02310) mnhG 421993..422367 (-) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  IMZ18_RS02315 (IMZ18_02315) mrpF 422351..422635 (-) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  IMZ18_RS02320 (IMZ18_02320) mrpE 422635..423111 (-) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  IMZ18_RS02325 (IMZ18_02325) mrpD 423117..424598 (-) 1482 WP_033881486.1 Na+/H+ antiporter subunit D -
  IMZ18_RS02330 (IMZ18_02330) mrpC 424591..424932 (-) 342 WP_014480700.1 Na(+)/H(+) antiporter subunit C -
  IMZ18_RS02335 (IMZ18_02335) mrpB 424932..425363 (-) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=493442 IMZ18_RS02300 WP_003220716.1 420911..421555(+) (comA) [Bacillus subtilis subsp. subtilis strain CMIN-4]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=493442 IMZ18_RS02300 WP_003220716.1 420911..421555(+) (comA) [Bacillus subtilis subsp. subtilis strain CMIN-4]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAATGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATAGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1