Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   IMY14_RS20025 Genome accession   NZ_CP063150
Coordinates   3854911..3855030 (+) Length   39 a.a.
NCBI ID   WP_174616696.1    Uniprot ID   -
Organism   Bacillus subtilis strain s-16     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3849911..3860030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMY14_RS20005 albG 3850077..3850778 (+) 702 WP_015384931.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  IMY14_RS20010 ywhL 3850784..3852157 (-) 1374 WP_047183346.1 YncE family protein -
  IMY14_RS20015 ywhK 3852197..3853552 (-) 1356 WP_047183347.1 YncE family protein -
  IMY14_RS22235 - 3853549..3853779 (-) 231 WP_047183348.1 hypothetical protein -
  IMY14_RS20020 rapF 3853782..3854927 (+) 1146 WP_047183349.1 response regulator aspartate phosphatase RapF Regulator
  IMY14_RS20025 phrF 3854911..3855030 (+) 120 WP_174616696.1 phosphatase RapF inhibitor PhrF Regulator
  IMY14_RS20030 - 3855128..3855592 (+) 465 WP_047183350.1 YbaK/EbsC family protein -
  IMY14_RS20035 speB 3855629..3856501 (-) 873 WP_003227545.1 agmatinase -
  IMY14_RS20040 speE 3856562..3857392 (-) 831 WP_003227543.1 spermidine synthase -
  IMY14_RS20045 pbpG 3857594..3859669 (+) 2076 WP_047183351.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4247.22 Da        Isoelectric Point: 9.5675

>NTDB_id=493432 IMY14_RS20025 WP_174616696.1 3854911..3855030(+) (phrF) [Bacillus subtilis strain s-16]
MKLKSKLLLSCLALCTVFMATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=493432 IMY14_RS20025 WP_174616696.1 3854911..3855030(+) (phrF) [Bacillus subtilis strain s-16]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTATGCACTGTGTTCATGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

92.593

69.231

0.641
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487