Detailed information NTG0493431

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: IMY14_RS20020
• Genome accession: NZ_CP063150
• Coordinates: 3853782..3854927 (+)
• Length: 381 a.a.
• NCBI ID: WP_047183349.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain s-16
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3848782..3859927

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IMY14_RS20000	albF	3848800..3850080 (+)	1281	WP_015483836.1	pitrilysin family protein	-
IMY14_RS20005	albG	3850077..3850778 (+)	702	WP_015384931.1	antilisterial bacteriocin subtilosin biosynthesis protein AlbG	-
IMY14_RS20010	ywhL	3850784..3852157 (-)	1374	WP_047183346.1	YncE family protein	-
IMY14_RS20015	ywhK	3852197..3853552 (-)	1356	WP_047183347.1	YncE family protein	-
IMY14_RS22235	-	3853549..3853779 (-)	231	WP_047183348.1	hypothetical protein	-
IMY14_RS20020	rapF	3853782..3854927 (+)	1146	WP_047183349.1	response regulator aspartate phosphatase RapF	Regulator
IMY14_RS20025	phrF	3854911..3855030 (+)	120	WP_174616696.1	phosphatase RapF inhibitor PhrF	Regulator
IMY14_RS20030	-	3855128..3855592 (+)	465	WP_047183350.1	YbaK/EbsC family protein	-
IMY14_RS20035	speB	3855629..3856501 (-)	873	WP_003227545.1	agmatinase	-
IMY14_RS20040	speE	3856562..3857392 (-)	831	WP_003227543.1	spermidine synthase	-
IMY14_RS20045	pbpG	3857594..3859669 (+)	2076	WP_047183351.1	transglycosylase domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45689.15 Da
• Isoelectric Point: 5.0678

>NTDB_id=493431 IMY14_RS20020 WP_047183349.1 3853782..3854927(+) (rapF) [Bacillus subtilis strain s-16]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDHMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKENEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED
AITYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKMDKAHEYHSKGMAYSQKAEDVIYLSEFEFLKSLYLSGPDEEAI
QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=493431 IMY14_RS20020 WP_047183349.1 3853782..3854927(+) (rapF) [Bacillus subtilis strain s-16]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTTAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCACATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTAATGGAGTTTCGGCACAACCTGATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAATTTCTTCAG
AGGCATGTATGAGCTGGACCAGCGGGAATATCTGTCGGCTATTAAATTTTTCAAAAAGGCCGAAAGCAAGCTGATATTCG
TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAAGCATATGAAATATACAAAGAAAATGAAGCTTATAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGATGCCATCTCACATTTTCAAAAAGCTTATTCTATGGCAGAAG
CTGAAAAGCAGCCCCAATTAATGGGAAGAACTTTGTACAATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCATAACTTATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT
AATTACACAGATCCATTATAAATTAGGAAAAATGGATAAAGCTCATGAATATCATAGTAAGGGAATGGCTTATTCACAAA
AGGCCGAAGATGTAATATATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCGGATGAAGAAGCAATT
CAAGGATTTTTTGATTTTCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCGCTATTGATGTGGCAAAATATTA
TCATGAACGTAAAAATTTTCAAAAAGCTTCTGCTTATTTTTTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGTTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-290)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3) (132-208)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	98.688	100	0.987
rapC	Bacillus subtilis subsp. subtilis str. 168	57.632	99.738	0.575