Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   IMY14_RS18955 Genome accession   NZ_CP063150
Coordinates   3635398..3636087 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain s-16     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3630398..3641087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMY14_RS18920 flgN 3630578..3631060 (-) 483 WP_014481048.1 flagellar protein FlgN -
  IMY14_RS18925 flgM 3631076..3631342 (-) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  IMY14_RS18930 yvyF 3631423..3631842 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  IMY14_RS18935 comFC 3631916..3632638 (-) 723 WP_047183272.1 comF operon protein ComFC Machinery gene
  IMY14_RS18940 comFB 3632602..3632898 (-) 297 WP_015483764.1 late competence protein ComFB -
  IMY14_RS18945 comFA 3632958..3634349 (-) 1392 WP_047183273.1 ATP-dependent helicase ComFA Machinery gene
  IMY14_RS18950 fakBA 3634455..3635300 (-) 846 WP_047183274.1 DegV family protein -
  IMY14_RS18955 degU 3635398..3636087 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  IMY14_RS18960 degS 3636170..3637327 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  IMY14_RS18965 yvyE 3637544..3638197 (+) 654 WP_003227979.1 YigZ family protein -
  IMY14_RS18970 tagV 3638197..3639372 (+) 1176 WP_047183275.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  IMY14_RS18975 tagO 3639445..3640521 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=493426 IMY14_RS18955 WP_003219701.1 3635398..3636087(-) (degU) [Bacillus subtilis strain s-16]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=493426 IMY14_RS18955 WP_003219701.1 3635398..3636087(-) (degU) [Bacillus subtilis strain s-16]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGTTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1