Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   IMY14_RS18935 Genome accession   NZ_CP063150
Coordinates   3631916..3632638 (-) Length   240 a.a.
NCBI ID   WP_047183272.1    Uniprot ID   -
Organism   Bacillus subtilis strain s-16     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3626916..3637638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMY14_RS18900 fliW 3627055..3627486 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  IMY14_RS18905 yviE 3627507..3628082 (-) 576 WP_015384781.1 DUF6470 family protein -
  IMY14_RS18910 flgL 3628129..3629025 (-) 897 WP_047183271.1 flagellar hook-associated protein FlgL -
  IMY14_RS18915 flgK 3629036..3630559 (-) 1524 WP_015384782.1 flagellar hook-associated protein FlgK -
  IMY14_RS18920 flgN 3630578..3631060 (-) 483 WP_014481048.1 flagellar protein FlgN -
  IMY14_RS18925 flgM 3631076..3631342 (-) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  IMY14_RS18930 yvyF 3631423..3631842 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  IMY14_RS18935 comFC 3631916..3632638 (-) 723 WP_047183272.1 comF operon protein ComFC Machinery gene
  IMY14_RS18940 comFB 3632602..3632898 (-) 297 WP_015483764.1 late competence protein ComFB -
  IMY14_RS18945 comFA 3632958..3634349 (-) 1392 WP_047183273.1 ATP-dependent helicase ComFA Machinery gene
  IMY14_RS18950 fakBA 3634455..3635300 (-) 846 WP_047183274.1 DegV family protein -
  IMY14_RS18955 degU 3635398..3636087 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  IMY14_RS18960 degS 3636170..3637327 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27553.74 Da        Isoelectric Point: 8.9656

>NTDB_id=493424 IMY14_RS18935 WP_047183272.1 3631916..3632638(-) (comFC) [Bacillus subtilis strain s-16]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLNKITGHICTLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSLTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSTEGMNIILIDDLYTTGATLHFAARCLLEKGNAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=493424 IMY14_RS18935 WP_047183272.1 3631916..3632638(-) (comFC) [Bacillus subtilis strain s-16]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTATTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAATAAAATCACAGGACATA
TTTGCACTCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATTAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTTAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGACACAAAAAATAATTCAACAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAACGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

97.083

100

0.971