Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   INP89_RS05020 Genome accession   NZ_CP063127
Coordinates   1013113..1013460 (-) Length   115 a.a.
NCBI ID   WP_005693346.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M1C112_1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1008113..1018460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP89_RS04995 (INP89_04990) otnI 1008580..1009356 (-) 777 WP_012055347.1 2-oxo-tetronate isomerase -
  INP89_RS05000 (INP89_04995) otnC 1009359..1009991 (-) 633 WP_005665968.1 3-oxo-tetronate 4-phosphate decarboxylase -
  INP89_RS05005 (INP89_05000) otnK 1009988..1011229 (-) 1242 WP_074039295.1 3-oxo-tetronate kinase -
  INP89_RS05010 (INP89_05005) ltnD 1011232..1012137 (-) 906 WP_005665973.1 L-threonate dehydrogenase -
  INP89_RS05015 (INP89_05010) - 1012308..1013066 (+) 759 WP_162650719.1 DeoR/GlpR family DNA-binding transcription regulator -
  INP89_RS05020 (INP89_05015) comE1/comEA 1013113..1013460 (-) 348 WP_005693346.1 helix-hairpin-helix domain-containing protein Machinery gene
  INP89_RS05025 (INP89_05020) ispH 1013629..1014573 (-) 945 WP_014550967.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  INP89_RS05030 (INP89_05025) lspA 1014570..1015085 (-) 516 WP_014550968.1 signal peptidase II -
  INP89_RS05035 (INP89_05030) - 1015155..1016714 (-) 1560 WP_074039299.1 phosphoethanolamine transferase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12355.16 Da        Isoelectric Point: 8.0085

>NTDB_id=493221 INP89_RS05020 WP_005693346.1 1013113..1013460(-) (comE1/comEA) [Haemophilus influenzae strain M1C112_1]
MKLMKTLFTSVVLCGALVVSSSFAEEKATEQTAQSVVTTQAEAQVAPAVVSDKLNINTATASEIQKSLTGIGAKKAEAIV
QYREKHGNFTNAEQLLEVQGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=493221 INP89_RS05020 WP_005693346.1 1013113..1013460(-) (comE1/comEA) [Haemophilus influenzae strain M1C112_1]
ATGAAATTAATGAAAACATTATTCACTTCGGTTGTATTGTGTGGTGCGCTGGTTGTTTCTTCGTCTTTTGCTGAGGAAAA
AGCGACAGAACAAACCGCTCAATCTGTTGTAACAACTCAAGCTGAAGCTCAAGTAGCACCAGCCGTAGTGAGCGATAAAT
TGAATATCAACACAGCAACTGCCAGTGAAATTCAAAAATCCCTAACTGGCATTGGTGCGAAAAAAGCGGAAGCTATTGTG
CAATATCGTGAAAAACACGGTAATTTTACTAATGCAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAACACTAGA
GAAAAATCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

98.214

97.391

0.957
  comEA/comE1 Glaesserella parasuis strain SC1401

58.261

100

0.583
  comEA Vibrio campbellii strain DS40M4

39.286

97.391

0.383