Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   INP90_RS00055 Genome accession   NZ_CP063124
Coordinates   11294..11962 (-) Length   222 a.a.
NCBI ID   WP_014064026.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C113_1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6294..16962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP90_RS00035 (INP90_00035) - 6592..7458 (-) 867 WP_005698439.1 MurR/RpiR family transcriptional regulator -
  INP90_RS00040 (INP90_00040) - 7451..8389 (-) 939 WP_197543630.1 N-acetylmannosamine kinase -
  INP90_RS00045 (INP90_00045) - 8401..9090 (-) 690 WP_197559660.1 N-acetylmannosamine-6-phosphate 2-epimerase -
  INP90_RS00050 (INP90_00050) nagE 9318..10784 (+) 1467 WP_054419706.1 N-acetylglucosamine-specific PTS transporter subunit IIBC -
  INP90_RS00055 (INP90_00055) crp 11294..11962 (-) 669 WP_014064026.1 cAMP-activated global transcriptional regulator CRP Regulator
  INP90_RS00060 (INP90_00060) - 11979..12197 (-) 219 WP_005695554.1 YheU family protein -
  INP90_RS00065 (INP90_00065) slmA 12219..12872 (-) 654 WP_005698358.1 nucleoid occlusion factor SlmA -
  INP90_RS00070 (INP90_00070) dut 12876..13331 (-) 456 WP_054419707.1 dUTP diphosphatase -
  INP90_RS00075 (INP90_00075) coaBC 13405..14607 (-) 1203 WP_197559661.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  INP90_RS00080 (INP90_00080) radC 14809..15474 (+) 666 WP_178160935.1 RadC family protein -
  INP90_RS00085 (INP90_00085) rpmB 15693..15929 (+) 237 WP_005599762.1 50S ribosomal protein L28 -
  INP90_RS00090 (INP90_00090) rpmG 15941..16111 (+) 171 WP_005613503.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25163.95 Da        Isoelectric Point: 6.6936

>NTDB_id=493186 INP90_RS00055 WP_014064026.1 11294..11962(-) (crp) [Haemophilus parainfluenzae strain M1C113_1]
MSEDVELLEEQKLQDDDQQRDPALDWFLTHCHLHKYPAKSTLIHAGEDANILYFLIKGTVMVSSKDDEGKEMILSYLGAG
QFFGEAGLFDEGSKRSAWVKTKTPCEIAEISYKKYRQLIQINPEILMFLTSQLSKRLQNTSRQVTNLAFLDVAGRIAQAL
MHLAKQPEAMTHPDGMQIKITRQEIGQMVGCSRETVGRIIKMLEDQNLIHAHGKTIVVYGTR

Nucleotide


Download         Length: 669 bp        

>NTDB_id=493186 INP90_RS00055 WP_014064026.1 11294..11962(-) (crp) [Haemophilus parainfluenzae strain M1C113_1]
ATGTCAGAAGATGTAGAATTACTTGAAGAACAAAAGTTACAAGACGATGATCAGCAACGCGATCCTGCTCTGGATTGGTT
CCTCACACACTGTCATTTACATAAATATCCGGCAAAATCGACCTTAATCCACGCAGGGGAAGATGCCAATATTTTATATT
TCTTAATTAAAGGAACGGTGATGGTTTCATCGAAAGATGATGAAGGCAAAGAGATGATTTTATCTTATCTAGGAGCTGGA
CAATTTTTTGGTGAAGCGGGTTTATTTGATGAAGGCTCGAAACGTTCTGCTTGGGTAAAAACGAAAACCCCTTGTGAAAT
TGCAGAAATTTCCTATAAAAAATATCGTCAGCTTATTCAAATTAATCCTGAGATTTTAATGTTCCTTACTTCTCAGTTAT
CAAAACGCTTGCAGAATACATCTCGACAAGTGACTAACTTGGCCTTTTTGGATGTGGCAGGCCGTATTGCTCAGGCGCTT
ATGCATCTAGCAAAACAACCTGAAGCCATGACTCATCCGGATGGCATGCAGATCAAAATTACTCGTCAGGAAATTGGTCA
AATGGTGGGCTGTTCACGTGAAACCGTAGGGCGAATAATTAAGATGCTGGAAGATCAAAATCTAATTCATGCGCACGGTA
AAACCATTGTGGTTTACGGCACTCGATAG

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(34-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(154-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Haemophilus influenzae Rd KW20

90.909

94.144

0.856
  crp Vibrio cholerae strain A1552

73.529

91.892

0.676
  crp Acinetobacter baumannii D1279779

46.231

89.64

0.414