Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   INP91_RS00155 Genome accession   NZ_CP063123
Coordinates   34947..35309 (-) Length   120 a.a.
NCBI ID   WP_197545943.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C120_2     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 29947..40309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP91_RS00135 (INP91_00135) - 30082..30585 (-) 504 WP_070868327.1 surface-adhesin E family protein -
  INP91_RS00140 (INP91_00140) pflA 30639..31379 (-) 741 WP_049364777.1 pyruvate formate lyase 1-activating protein -
  INP91_RS00145 (INP91_00145) pflB 31511..33823 (-) 2313 WP_005698045.1 formate C-acetyltransferase -
  INP91_RS00150 (INP91_00150) focA 33879..34733 (-) 855 WP_049372705.1 formate transporter FocA -
  INP91_RS00155 (INP91_00155) comE1/comEA 34947..35309 (-) 363 WP_197545943.1 helix-hairpin-helix domain-containing protein Machinery gene
  INP91_RS00160 (INP91_00160) - 35455..35772 (-) 318 WP_005695251.1 heavy metal-binding domain-containing protein -
  INP91_RS00165 (INP91_00165) rdgB 35811..36410 (-) 600 WP_197545944.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  INP91_RS00170 (INP91_00170) - 36542..36913 (+) 372 WP_178163589.1 DUF305 domain-containing protein -
  INP91_RS00175 (INP91_00175) ispH 36962..37906 (-) 945 WP_049376185.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  INP91_RS00180 (INP91_00180) lspA 37903..38394 (-) 492 WP_111387182.1 signal peptidase II -
  INP91_RS00185 (INP91_00185) glmU 38511..39881 (-) 1371 WP_197545945.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13210.17 Da        Isoelectric Point: 9.6912

>NTDB_id=493155 INP91_RS00155 WP_197545943.1 34947..35309(-) (comE1/comEA) [Haemophilus parainfluenzae strain M1C120_2]
MKLIKHLFSSLFIAGTMLSTQALAEEKTVEQTQPQMQVQQQTAVQAPSQTVQQTVSDKLNINTASASEIQKALIGIGAKK
AEAIVQYREKHGNFTVAEQLLEVQGIGKATLEKNRDRIVF

Nucleotide


Download         Length: 363 bp        

>NTDB_id=493155 INP91_RS00155 WP_197545943.1 34947..35309(-) (comE1/comEA) [Haemophilus parainfluenzae strain M1C120_2]
ATGAAATTGATAAAACATTTATTTAGTTCATTATTTATTGCAGGCACGATGTTGAGTACACAAGCACTTGCAGAAGAAAA
GACAGTAGAGCAGACTCAACCGCAAATGCAAGTGCAGCAACAAACTGCTGTACAAGCACCATCACAAACTGTACAACAAA
CGGTGAGTGATAAATTAAATATCAATACCGCTAGCGCATCAGAGATTCAAAAAGCGCTGATTGGTATTGGGGCAAAAAAA
GCAGAAGCCATTGTGCAATATCGTGAGAAACACGGCAATTTCACTGTGGCAGAACAACTACTTGAAGTACAAGGCATTGG
TAAAGCTACGCTAGAGAAAAACCGAGATCGTATCGTGTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(57-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

64.103

97.5

0.625
  comEA/comE1 Glaesserella parasuis strain SC1401

53.39

98.333

0.525
  comEA Acinetobacter baylyi ADP1

34.646

100

0.367