Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   INP92_RS01350 Genome accession   NZ_CP063122
Coordinates   273734..274096 (-) Length   120 a.a.
NCBI ID   WP_197554477.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C125_4     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 268734..279096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP92_RS01330 (INP92_01330) - 268872..269375 (-) 504 WP_070868327.1 surface-adhesin E family protein -
  INP92_RS01335 (INP92_01335) pflA 269428..270168 (-) 741 WP_049364777.1 pyruvate formate lyase 1-activating protein -
  INP92_RS01340 (INP92_01340) pflB 270299..272611 (-) 2313 WP_049371761.1 formate C-acetyltransferase -
  INP92_RS01345 (INP92_01345) focA 272667..273521 (-) 855 WP_049372705.1 formate transporter FocA -
  INP92_RS01350 (INP92_01350) comE1/comEA 273734..274096 (-) 363 WP_197554477.1 helix-hairpin-helix domain-containing protein Machinery gene
  INP92_RS01355 (INP92_01355) - 274242..274559 (-) 318 WP_005695251.1 heavy metal-binding domain-containing protein -
  INP92_RS01360 (INP92_01360) rdgB 274598..275197 (-) 600 WP_197554480.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  INP92_RS01365 (INP92_01365) - 275329..275700 (+) 372 WP_197554483.1 DUF305 domain-containing protein -
  INP92_RS01370 (INP92_01370) ispH 275749..276693 (-) 945 WP_197554486.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  INP92_RS01375 (INP92_01375) lspA 276690..277181 (-) 492 WP_049364771.1 signal peptidase II -
  INP92_RS01380 (INP92_01380) glmU 277298..278668 (-) 1371 WP_049371771.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13128.03 Da        Isoelectric Point: 9.6912

>NTDB_id=493131 INP92_RS01350 WP_197554477.1 273734..274096(-) (comE1/comEA) [Haemophilus parainfluenzae strain M1C125_4]
MKLMKHLFSSLFIAGAMLSTQVLAEEKTSEQAQAQTQVQQQTAVQAPSQTVQQTVSDKLNINTASASEIQKALIGIGAKK
AEAIVQYREKHGNFTVAEQLLEVQGIGKATLEKNRDRIVF

Nucleotide


Download         Length: 363 bp        

>NTDB_id=493131 INP92_RS01350 WP_197554477.1 273734..274096(-) (comE1/comEA) [Haemophilus parainfluenzae strain M1C125_4]
ATGAAATTGATGAAACATTTATTTAGTTCATTATTTATTGCAGGCGCGATGTTGAGTACACAAGTGCTTGCAGAAGAAAA
GACATCTGAGCAGGCTCAAGCGCAAACGCAAGTGCAGCAACAAACAGCTGTACAAGCACCATCACAAACTGTACAACAAA
CGGTGAGTGATAAATTAAATATCAATACCGCCAGTGCATCAGAAATTCAAAAAGCGCTGATTGGTATTGGGGCGAAAAAA
GCAGAAGCCATTGTGCAATATCGTGAAAAGCACGGTAATTTCACTGTGGCAGAACAACTACTTGAAGTACAAGGTATTGG
CAAAGCTACGTTAGAGAAAAACCGAGATCGTATCGTGTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(57-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

64.957

97.5

0.633
  comEA/comE1 Glaesserella parasuis strain SC1401

52.542

98.333

0.517
  comEA Acinetobacter baylyi ADP1

34.921

100

0.367