Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   INP94_RS10275 Genome accession   NZ_CP063120
Coordinates   2077911..2078627 (-) Length   238 a.a.
NCBI ID   WP_197544304.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C137_2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2072911..2083627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP94_RS10255 (INP94_10250) nrdR 2073024..2073473 (-) 450 WP_005695670.1 transcriptional regulator NrdR -
  INP94_RS10260 (INP94_10255) recC 2073551..2076910 (-) 3360 WP_197543564.1 exodeoxyribonuclease V subunit gamma -
  INP94_RS10265 (INP94_10260) comQ 2076948..2077235 (-) 288 WP_197543565.1 DUF5374 domain-containing protein Machinery gene
  INP94_RS10270 (INP94_10265) comP 2077228..2077914 (-) 687 WP_197543566.1 DUF2572 family protein Machinery gene
  INP94_RS10275 (INP94_10270) comO 2077911..2078627 (-) 717 WP_197544304.1 PulJ/GspJ family protein Machinery gene
  INP94_RS10280 (INP94_10275) comN 2078624..2079142 (-) 519 WP_197543567.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  INP94_RS10285 (INP94_10280) suhB 2079342..2080142 (+) 801 WP_197543568.1 inositol-1-monophosphatase -
  INP94_RS10290 (INP94_10285) bioB 2080187..2081203 (-) 1017 WP_197543569.1 biotin synthase BioB -
  INP94_RS10295 (INP94_10290) thiQ 2081277..2081906 (-) 630 WP_197543570.1 thiamine ABC transporter ATP-binding protein -
  INP94_RS10300 (INP94_10295) thiP 2081899..2083503 (-) 1605 WP_197543571.1 thiamine/thiamine pyrophosphate ABC transporter permease ThiP -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26666.71 Da        Isoelectric Point: 7.9298

>NTDB_id=493088 INP94_RS10275 WP_197544304.1 2077911..2078627(-) (comO) [Haemophilus parainfluenzae strain M1C137_2]
MKPLKGETLVSLLISLGLSALLLLLVAQFYAQTQQQNQRLMLQLKLQTELQRTIQLIGKDLRRVGFRSANQKLIEDNLAL
FELDEKGTAITIAQADNAPSNSCVLFFYDLNSNGCIGEKYTKNTCVNGVKNVAKNIEKELFGYKLNGKMIETKQTYKNAV
NTDCRSAECQRALAQSTCNAGGGWTDLLDEKEFEISQLRFDWLKAGKGIEIKLTGHLAAYKHIQYETSLVVPLLNQEE

Nucleotide


Download         Length: 717 bp        

>NTDB_id=493088 INP94_RS10275 WP_197544304.1 2077911..2078627(-) (comO) [Haemophilus parainfluenzae strain M1C137_2]
ATGAAACCATTAAAAGGCGAAACATTGGTGAGTTTGTTGATTTCACTTGGCTTATCCGCTTTATTATTGCTATTGGTTGC
ACAATTTTATGCCCAAACTCAACAGCAGAATCAGCGTTTAATGTTACAACTCAAACTACAAACGGAATTACAACGTACAA
TTCAACTCATCGGGAAAGATTTGCGTCGCGTAGGCTTTCGGAGCGCAAACCAAAAACTCATCGAGGATAATCTGGCTTTA
TTTGAATTGGATGAAAAGGGCACTGCAATAACCATTGCTCAAGCTGATAATGCCCCGTCAAATAGTTGTGTTTTGTTTTT
TTATGATTTGAATAGCAATGGTTGTATTGGTGAAAAATACACAAAAAATACCTGCGTAAATGGCGTTAAAAATGTGGCGA
AAAATATCGAAAAAGAGCTATTTGGTTACAAACTTAACGGCAAAATGATCGAAACCAAACAAACCTACAAAAATGCAGTA
AATACAGATTGTCGCTCAGCAGAGTGTCAGCGAGCCTTAGCGCAATCTACTTGTAACGCTGGTGGTGGATGGACTGATTT
ATTGGATGAAAAAGAGTTTGAGATTTCTCAATTACGTTTTGATTGGTTAAAGGCAGGGAAAGGGATTGAAATTAAACTCA
CTGGGCATCTTGCCGCATATAAGCATATTCAATATGAAACTTCGCTTGTAGTGCCTTTATTAAATCAAGAAGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

61.966

98.319

0.609