Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   INP94_RS10280 Genome accession   NZ_CP063120
Coordinates   2078624..2079142 (-) Length   172 a.a.
NCBI ID   WP_197543567.1    Uniprot ID   A0A7M1NYH5
Organism   Haemophilus parainfluenzae strain M1C137_2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2073624..2084142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP94_RS10265 (INP94_10260) comQ 2076948..2077235 (-) 288 WP_197543565.1 DUF5374 domain-containing protein Machinery gene
  INP94_RS10270 (INP94_10265) comP 2077228..2077914 (-) 687 WP_197543566.1 DUF2572 family protein Machinery gene
  INP94_RS10275 (INP94_10270) comO 2077911..2078627 (-) 717 WP_197544304.1 PulJ/GspJ family protein Machinery gene
  INP94_RS10280 (INP94_10275) comN 2078624..2079142 (-) 519 WP_197543567.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  INP94_RS10285 (INP94_10280) suhB 2079342..2080142 (+) 801 WP_197543568.1 inositol-1-monophosphatase -
  INP94_RS10290 (INP94_10285) bioB 2080187..2081203 (-) 1017 WP_197543569.1 biotin synthase BioB -
  INP94_RS10295 (INP94_10290) thiQ 2081277..2081906 (-) 630 WP_197543570.1 thiamine ABC transporter ATP-binding protein -
  INP94_RS10300 (INP94_10295) thiP 2081899..2083503 (-) 1605 WP_197543571.1 thiamine/thiamine pyrophosphate ABC transporter permease ThiP -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 20078.18 Da        Isoelectric Point: 8.7008

>NTDB_id=493089 INP94_RS10280 WP_197543567.1 2078624..2079142(-) (comN) [Haemophilus parainfluenzae strain M1C137_2]
MYKGITLLETLIALFILSVTLAFALPKWQKNDPKYFLEKEQQRLYFFLRNIQARAENSSAIWFILANQDRANQRWCITAQ
VKSDHFCDCFHPQDCPKNLYAHFYYPYFEGKTMLIGPKLYPSEVAVKFNGARNTMETNCFMLQAEEHRTLFSFFNVGSIK
LKSDQAASACTR

Nucleotide


Download         Length: 519 bp        

>NTDB_id=493089 INP94_RS10280 WP_197543567.1 2078624..2079142(-) (comN) [Haemophilus parainfluenzae strain M1C137_2]
ATGTATAAAGGGATAACCTTATTAGAAACCTTGATTGCATTATTTATTTTAAGCGTAACGTTGGCGTTTGCATTGCCTAA
ATGGCAGAAAAACGATCCCAAATATTTTCTCGAAAAAGAGCAACAACGGCTTTATTTTTTCTTACGTAATATCCAAGCGA
GGGCAGAAAACTCATCGGCAATTTGGTTTATTTTAGCCAATCAAGATAGGGCGAATCAACGTTGGTGTATCACCGCTCAA
GTAAAAAGCGATCATTTTTGTGATTGTTTTCATCCCCAGGATTGTCCTAAAAACCTTTATGCACATTTTTACTATCCTTA
TTTTGAAGGAAAAACGATGCTTATAGGCCCTAAATTATATCCGTCAGAAGTGGCGGTGAAATTTAATGGAGCAAGAAATA
CCATGGAAACGAATTGTTTTATGTTACAGGCTGAAGAGCATCGTACATTGTTCTCTTTTTTCAATGTAGGCAGTATTAAA
TTAAAGTCTGATCAAGCGGCGAGTGCATGTACAAGATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7M1NYH5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

58.824

98.837

0.581