Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   INP98_RS00310 Genome accession   NZ_CP063112
Coordinates   57464..58141 (+) Length   225 a.a.
NCBI ID   WP_197570028.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C149_1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 52464..63141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP98_RS00285 (INP98_00285) rppH 52622..53215 (-) 594 WP_197570025.1 RNA pyrophosphohydrolase -
  INP98_RS00290 (INP98_00290) ampD 53700..54263 (-) 564 WP_197570026.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  INP98_RS00295 (INP98_00295) pilA 54406..54849 (+) 444 WP_005697917.1 prepilin peptidase-dependent pilin Machinery gene
  INP98_RS00300 (INP98_00300) pilB 54856..56235 (+) 1380 WP_197543655.1 GspE/PulE family protein Machinery gene
  INP98_RS00305 (INP98_00305) pilC 56244..57467 (+) 1224 WP_197570027.1 type II secretion system F family protein Machinery gene
  INP98_RS00310 (INP98_00310) pilD 57464..58141 (+) 678 WP_197570028.1 prepilin peptidase Machinery gene
  INP98_RS00315 (INP98_00315) coaE 58230..58850 (+) 621 WP_197543658.1 dephospho-CoA kinase -
  INP98_RS00320 (INP98_00320) yacG 58843..59049 (+) 207 WP_005695505.1 DNA gyrase inhibitor YacG -
  INP98_RS00325 (INP98_00325) - 59046..59327 (+) 282 WP_197543659.1 GNAT family N-acetyltransferase -
  INP98_RS00330 (INP98_00330) rhlB 59418..60677 (+) 1260 WP_197570029.1 ATP-dependent RNA helicase RhlB -
  INP98_RS00335 (INP98_00335) mreD 60719..61207 (-) 489 WP_049364929.1 rod shape-determining protein MreD -
  INP98_RS00340 (INP98_00340) mreC 61207..62271 (-) 1065 WP_049369504.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25892.71 Da        Isoelectric Point: 6.6195

>NTDB_id=492938 INP98_RS00310 WP_197570028.1 57464..58141(+) (pilD) [Haemophilus parainfluenzae strain M1C149_1]
MMTFAFFLLGGLAGIFAWLYIVRFIPNLQQEIYQNYIELYPENSPIFHSEKAAIQSQNCGHIFLYFLGFGLSFAVLCYFF
QDELFTLWLAITLSLLFVISWLDWNYQLISPTPCLFLFFLGLFGAHQKLSILTLSQSLESAVSFFGVFYIIYHLSKWFYK
KEALGRGDYWLALGIGTYLTIAHLPLFLFIACLLGIIGYWISRQPVLPFAPFLCLSLIITSAINL

Nucleotide


Download         Length: 678 bp        

>NTDB_id=492938 INP98_RS00310 WP_197570028.1 57464..58141(+) (pilD) [Haemophilus parainfluenzae strain M1C149_1]
ATGATGACATTCGCCTTTTTCTTATTGGGTGGTTTAGCGGGCATCTTTGCTTGGCTTTATATCGTTCGTTTTATTCCTAA
TCTCCAACAAGAAATTTATCAGAACTATATCGAACTGTATCCTGAAAACAGTCCTATTTTCCATAGCGAAAAAGCAGCGA
TTCAATCTCAAAATTGCGGTCATATTTTTCTTTATTTTTTAGGATTTGGACTCAGTTTTGCTGTACTCTGTTATTTTTTT
CAAGATGAATTATTTACTTTATGGCTCGCGATTACGCTTAGTCTACTGTTTGTTATCAGTTGGCTAGACTGGAATTATCA
ACTGATTTCACCGACACCTTGCCTGTTTTTATTTTTCCTGGGGCTATTCGGCGCACATCAAAAACTTTCAATTCTGACGC
TTTCTCAAAGTTTAGAAAGTGCGGTTAGTTTTTTCGGTGTTTTTTATATCATCTATCATTTGTCTAAATGGTTTTATAAG
AAGGAAGCGTTAGGCCGTGGCGATTATTGGCTTGCTTTGGGAATCGGCACTTATCTCACCATCGCGCACTTACCACTTTT
CTTATTCATTGCCTGTCTATTAGGCATCATAGGTTATTGGATTTCTCGTCAGCCCGTTTTACCTTTCGCGCCCTTTCTTT
GCTTATCGTTAATCATCACCAGTGCAATCAACCTATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(91-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Haemophilus influenzae 86-028NP

52.036

98.222

0.511
  pilD Haemophilus influenzae Rd KW20

52.036

98.222

0.511