Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HW245_RS03910 Genome accession   NZ_CP063086
Coordinates   767397..768182 (+) Length   261 a.a.
NCBI ID   WP_014667435.1    Uniprot ID   -
Organism   Helicobacter cinaedi strain 2017D-0197     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 762397..773182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HW245_RS03880 (HW245_03875) - 762471..763676 (+) 1206 WP_104717049.1 argininosuccinate synthase -
  HW245_RS03885 (HW245_03880) - 763682..764596 (+) 915 WP_002955978.1 hypothetical protein -
  HW245_RS03890 (HW245_03885) - 764596..765147 (+) 552 WP_002955977.1 hypothetical protein -
  HW245_RS03895 (HW245_03890) minD 765214..766029 (+) 816 WP_014667436.1 septum site-determining protein MinD -
  HW245_RS03900 (HW245_03895) minE 766026..766277 (+) 252 WP_002955975.1 cell division topological specificity factor MinE -
  HW245_RS03905 (HW245_03900) - 766278..767360 (+) 1083 WP_015453883.1 divergent polysaccharide deacetylase family protein -
  HW245_RS03910 (HW245_03905) dprA 767397..768182 (+) 786 WP_014667435.1 DNA-processing protein DprA Machinery gene
  HW245_RS03915 (HW245_03910) dprB 768182..768604 (+) 423 WP_002955972.1 Holliday junction resolvase RuvX Machinery gene
  HW245_RS03920 (HW245_03915) - 768704..769345 (+) 642 WP_002955971.1 TetR/AcrR family transcriptional regulator -
  HW245_RS03925 (HW245_03920) - 769283..769525 (-) 243 WP_133252118.1 hypothetical protein -
  HW245_RS03930 (HW245_03925) ybeY 770187..770852 (-) 666 WP_230197842.1 rRNA maturation RNase YbeY -
  HW245_RS03935 (HW245_03930) speA 770977..772827 (+) 1851 WP_002955968.1 biosynthetic arginine decarboxylase -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 29122.00 Da        Isoelectric Point: 8.7183

>NTDB_id=492817 HW245_RS03910 WP_014667435.1 767397..768182(+) (dprA) [Helicobacter cinaedi strain 2017D-0197]
MKADIQSLESIPLNLKALKNPPKKLFYKGGALDSLLQAQPKIAIVGTRKPNPYTKSFVAKLASNIAKLQGVVVSGGAIGV
DIIAHIHAFPRTIMFSPSSLDIYYPRSNKTMIEKMMQECAVISEYESPYMPHRFSFLERNRLVIALSDVVIIPQADKQSG
SMQSARIACELKKELFVLPHRLGESDGTQELLAKGKAQCIYDINAFLEGIFGVKLQENDEVLAFCMKNPSFEEAYLKFGE
KIYEYELEGKIVRESGSIRVL

Nucleotide


Download         Length: 786 bp        

>NTDB_id=492817 HW245_RS03910 WP_014667435.1 767397..768182(+) (dprA) [Helicobacter cinaedi strain 2017D-0197]
ATGAAAGCAGATATACAATCTTTAGAATCTATCCCTTTAAATCTTAAAGCATTAAAAAATCCACCAAAAAAGCTTTTTTA
TAAGGGTGGGGCATTAGATTCACTGCTTCAAGCACAGCCTAAAATCGCCATTGTCGGCACAAGAAAGCCTAATCCTTACA
CAAAGTCCTTTGTTGCTAAACTCGCTTCAAATATCGCAAAGCTTCAAGGTGTAGTGGTGAGCGGAGGGGCGATTGGTGTG
GATATTATCGCACATATTCACGCTTTTCCACGCACGATAATGTTCTCCCCCTCAAGCCTAGATATTTACTATCCGCGTTC
AAATAAAACAATGATTGAAAAAATGATGCAAGAATGTGCGGTAATAAGCGAGTATGAAAGCCCATATATGCCCCATAGAT
TTAGCTTTTTAGAACGCAATCGGCTTGTGATTGCCCTAAGTGATGTGGTGATTATCCCCCAAGCAGATAAGCAAAGTGGC
TCAATGCAGAGTGCTAGAATCGCCTGTGAGCTTAAAAAAGAGCTTTTTGTCCTGCCTCATCGTTTGGGGGAGAGTGATGG
GACACAAGAGCTTTTAGCCAAGGGCAAGGCACAATGTATTTATGATATAAATGCGTTTTTGGAAGGGATTTTTGGCGTGA
AATTGCAAGAAAATGATGAGGTTTTGGCATTTTGTATGAAGAATCCTAGCTTTGAGGAGGCGTATTTAAAATTTGGTGAA
AAGATTTATGAATACGAGCTTGAAGGCAAAATCGTGCGTGAATCTGGAAGCATACGGGTGCTTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(10-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

55

99.617

0.548
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.362

90.038

0.444