Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HW245_RS03915 Genome accession   NZ_CP063086
Coordinates   768182..768604 (+) Length   140 a.a.
NCBI ID   WP_002955972.1    Uniprot ID   -
Organism   Helicobacter cinaedi strain 2017D-0197     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 763182..773604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HW245_RS03885 (HW245_03880) - 763682..764596 (+) 915 WP_002955978.1 hypothetical protein -
  HW245_RS03890 (HW245_03885) - 764596..765147 (+) 552 WP_002955977.1 hypothetical protein -
  HW245_RS03895 (HW245_03890) minD 765214..766029 (+) 816 WP_014667436.1 septum site-determining protein MinD -
  HW245_RS03900 (HW245_03895) minE 766026..766277 (+) 252 WP_002955975.1 cell division topological specificity factor MinE -
  HW245_RS03905 (HW245_03900) - 766278..767360 (+) 1083 WP_015453883.1 divergent polysaccharide deacetylase family protein -
  HW245_RS03910 (HW245_03905) dprA 767397..768182 (+) 786 WP_014667435.1 DNA-processing protein DprA Machinery gene
  HW245_RS03915 (HW245_03910) dprB 768182..768604 (+) 423 WP_002955972.1 Holliday junction resolvase RuvX Machinery gene
  HW245_RS03920 (HW245_03915) - 768704..769345 (+) 642 WP_002955971.1 TetR/AcrR family transcriptional regulator -
  HW245_RS03925 (HW245_03920) - 769283..769525 (-) 243 WP_133252118.1 hypothetical protein -
  HW245_RS03930 (HW245_03925) ybeY 770187..770852 (-) 666 WP_230197842.1 rRNA maturation RNase YbeY -
  HW245_RS03935 (HW245_03930) speA 770977..772827 (+) 1851 WP_002955968.1 biosynthetic arginine decarboxylase -
  HW245_RS03940 (HW245_03935) cysE 772841..773599 (+) 759 WP_014667432.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15456.94 Da        Isoelectric Point: 7.1676

>NTDB_id=492818 HW245_RS03915 WP_002955972.1 768182..768604(+) (dprB) [Helicobacter cinaedi strain 2017D-0197]
MENKKILACDVGLKRIGLAVTQLGIILPIEPIIRKNRNQASKELSEILKTREIEILVVGLPSGGEAGHSDTRKRILHFVG
LVAFGGEIAYIDEDYTSLEALQSSAYMGVQNRLKIQKDGRLDSLSATLILERFLESNNPL

Nucleotide


Download         Length: 423 bp        

>NTDB_id=492818 HW245_RS03915 WP_002955972.1 768182..768604(+) (dprB) [Helicobacter cinaedi strain 2017D-0197]
ATGGAAAACAAAAAGATTCTAGCCTGTGATGTGGGGCTAAAAAGGATAGGTTTAGCGGTTACACAACTTGGCATTATCCT
GCCAATAGAGCCAATCATACGCAAAAATCGCAATCAAGCCTCTAAGGAACTAAGCGAGATATTAAAAACGCGTGAGATTG
AGATTCTAGTCGTTGGACTGCCAAGCGGTGGGGAAGCGGGGCATAGTGATACGCGTAAAAGAATCTTGCATTTTGTGGGG
CTTGTTGCATTTGGCGGGGAGATAGCCTATATTGATGAAGATTATACAAGCCTAGAGGCTTTGCAATCAAGTGCGTATAT
GGGAGTGCAAAATCGGCTTAAGATTCAAAAAGATGGGCGGCTAGATTCTCTTAGTGCGACTTTGATTTTAGAAAGATTTT
TAGAATCTAATAATCCTTTATAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(5-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

53.077

92.857

0.493