Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HW260_RS10590 Genome accession   NZ_CP063081
Coordinates   2053534..2054319 (+) Length   261 a.a.
NCBI ID   WP_002955973.1    Uniprot ID   A0AAI8MPQ4
Organism   Helicobacter cinaedi strain D7095     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2048534..2059319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HW260_RS10560 (HW260_10540) - 2048608..2049813 (+) 1206 WP_002955979.1 argininosuccinate synthase -
  HW260_RS10565 (HW260_10545) - 2049819..2050733 (+) 915 WP_002955978.1 hypothetical protein -
  HW260_RS10570 (HW260_10550) - 2050733..2051284 (+) 552 WP_002955977.1 hypothetical protein -
  HW260_RS10575 (HW260_10555) minD 2051351..2052166 (+) 816 WP_002955976.1 septum site-determining protein MinD -
  HW260_RS10580 (HW260_10560) minE 2052163..2052414 (+) 252 WP_002955975.1 cell division topological specificity factor MinE -
  HW260_RS10585 (HW260_10565) - 2052415..2053497 (+) 1083 WP_015453883.1 divergent polysaccharide deacetylase family protein -
  HW260_RS10590 (HW260_10570) dprA 2053534..2054319 (+) 786 WP_002955973.1 DNA-processing protein DprA Machinery gene
  HW260_RS10595 (HW260_10575) dprB 2054319..2054741 (+) 423 WP_002955972.1 Holliday junction resolvase RuvX Machinery gene
  HW260_RS10600 (HW260_10580) - 2054841..2055482 (+) 642 WP_002955971.1 TetR/AcrR family transcriptional regulator -
  HW260_RS10605 (HW260_10585) - 2055420..2055743 (-) 324 WP_133247155.1 hypothetical protein -
  HW260_RS10610 (HW260_10590) ybeY 2056322..2056987 (-) 666 WP_230197842.1 rRNA maturation RNase YbeY -
  HW260_RS10615 (HW260_10595) speA 2057112..2058962 (+) 1851 WP_002955968.1 biosynthetic arginine decarboxylase -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 29150.05 Da        Isoelectric Point: 8.7183

>NTDB_id=492812 HW260_RS10590 WP_002955973.1 2053534..2054319(+) (dprA) [Helicobacter cinaedi strain D7095]
MKADIQSLESIPLNLKALKNPPKKLFYKGGALDSLLQVQPKIAIVGTRKPNPYTKSFVAKLASNIAKLQGVVVSGGAIGV
DIIAHIHAFPRTIMFSPSSLDIYYPRSNKTMIEKMMQECAVISEYESPYMPHRFSFLERNRLVIALSDVVIIPQADKQSG
SMQSARIACELKKELFVLPHRLGESDGTQELLAKGKAQCIYDINAFLEGIFGVKLQENDEVLAFCMKNPSFEEAYLKFGE
KIYEYELEGKIVRESGSIRVL

Nucleotide


Download         Length: 786 bp        

>NTDB_id=492812 HW260_RS10590 WP_002955973.1 2053534..2054319(+) (dprA) [Helicobacter cinaedi strain D7095]
ATGAAAGCAGATATACAATCTTTAGAATCTATCCCTTTAAATCTTAAAGCATTAAAAAATCCACCAAAAAAGCTTTTTTA
TAAGGGTGGGGCATTAGATTCACTGCTTCAAGTACAGCCTAAAATCGCCATTGTCGGCACAAGAAAGCCTAATCCTTACA
CAAAGTCCTTTGTTGCTAAACTCGCTTCAAATATCGCAAAGCTTCAAGGTGTAGTGGTGAGCGGAGGGGCGATTGGTGTG
GATATTATCGCACATATTCACGCTTTTCCACGCACGATAATGTTCTCCCCCTCAAGCCTAGATATTTACTATCCGCGTTC
AAATAAAACAATGATTGAAAAAATGATGCAAGAATGTGCGGTAATAAGCGAGTATGAAAGCCCATATATGCCCCATAGAT
TTAGCTTTTTAGAACGCAATCGGCTTGTGATTGCCCTAAGTGATGTGGTGATTATCCCCCAAGCAGATAAGCAAAGTGGC
TCAATGCAGAGTGCTAGAATCGCCTGTGAGCTTAAAAAAGAGCTTTTTGTCCTGCCTCATCGTTTGGGGGAGAGTGATGG
GACACAAGAGCTTTTAGCCAAGGGCAAGGCACAATGTATTTATGATATAAATGCGTTTTTGGAAGGGATTTTTGGCGTGA
AATTGCAAGAAAATGATGAGGTTTTGGCATTTTGTATGAAGAATCCTAGCTTTGAGGAGGCGTATTTAAAATTTGGTGAA
AAGATTTATGAATACGAGCTTGAAGGCAAAATCGTGCGTGAATCTGGAAGCATACGGGTGCTTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(10-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

55

99.617

0.548
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.362

90.038

0.444