Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HW260_RS10595 Genome accession   NZ_CP063081
Coordinates   2054319..2054741 (+) Length   140 a.a.
NCBI ID   WP_002955972.1    Uniprot ID   -
Organism   Helicobacter cinaedi strain D7095     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2049319..2059741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HW260_RS10565 (HW260_10545) - 2049819..2050733 (+) 915 WP_002955978.1 hypothetical protein -
  HW260_RS10570 (HW260_10550) - 2050733..2051284 (+) 552 WP_002955977.1 hypothetical protein -
  HW260_RS10575 (HW260_10555) minD 2051351..2052166 (+) 816 WP_002955976.1 septum site-determining protein MinD -
  HW260_RS10580 (HW260_10560) minE 2052163..2052414 (+) 252 WP_002955975.1 cell division topological specificity factor MinE -
  HW260_RS10585 (HW260_10565) - 2052415..2053497 (+) 1083 WP_015453883.1 divergent polysaccharide deacetylase family protein -
  HW260_RS10590 (HW260_10570) dprA 2053534..2054319 (+) 786 WP_002955973.1 DNA-processing protein DprA Machinery gene
  HW260_RS10595 (HW260_10575) dprB 2054319..2054741 (+) 423 WP_002955972.1 Holliday junction resolvase RuvX Machinery gene
  HW260_RS10600 (HW260_10580) - 2054841..2055482 (+) 642 WP_002955971.1 TetR/AcrR family transcriptional regulator -
  HW260_RS10605 (HW260_10585) - 2055420..2055743 (-) 324 WP_133247155.1 hypothetical protein -
  HW260_RS10610 (HW260_10590) ybeY 2056322..2056987 (-) 666 WP_230197842.1 rRNA maturation RNase YbeY -
  HW260_RS10615 (HW260_10595) speA 2057112..2058962 (+) 1851 WP_002955968.1 biosynthetic arginine decarboxylase -
  HW260_RS10620 (HW260_10600) cysE 2058976..2059734 (+) 759 WP_014667432.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15456.94 Da        Isoelectric Point: 7.1676

>NTDB_id=492813 HW260_RS10595 WP_002955972.1 2054319..2054741(+) (dprB) [Helicobacter cinaedi strain D7095]
MENKKILACDVGLKRIGLAVTQLGIILPIEPIIRKNRNQASKELSEILKTREIEILVVGLPSGGEAGHSDTRKRILHFVG
LVAFGGEIAYIDEDYTSLEALQSSAYMGVQNRLKIQKDGRLDSLSATLILERFLESNNPL

Nucleotide


Download         Length: 423 bp        

>NTDB_id=492813 HW260_RS10595 WP_002955972.1 2054319..2054741(+) (dprB) [Helicobacter cinaedi strain D7095]
ATGGAAAACAAAAAGATTCTAGCCTGTGATGTGGGGCTAAAAAGGATAGGTTTAGCGGTTACACAACTTGGCATTATCCT
GCCAATAGAGCCAATCATACGCAAAAATCGCAATCAAGCCTCTAAGGAACTAAGCGAGATATTAAAAACGCGTGAGATTG
AGATTCTAGTCGTTGGACTGCCAAGCGGTGGGGAAGCGGGGCATAGTGATACGCGTAAAAGAATCTTGCATTTTGTGGGG
CTTGTTGCATTTGGCGGGGAGATAGCCTATATTGATGAAGATTATACAAGCCTAGAGGCTTTGCAATCAAGTGCGTATAT
GGGAGTGCAAAATCGGCTTAAGATTCAAAAAGATGGGCGGCTAGATTCTCTTAGTGCGACTTTGATTTTAGAAAGATTTT
TAGAATCTAATAATCCTTTATAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(5-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

53.077

92.857

0.493