Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   IMF22_RS12340 Genome accession   NZ_CP063073
Coordinates   2835309..2837534 (-) Length   741 a.a.
NCBI ID   WP_197628990.1    Uniprot ID   A0A7M1KNC8
Organism   Pseudomonas poae strain PMA22     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2830309..2842534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMF22_RS12305 (IMF22_12305) murB 2830680..2831699 (-) 1020 WP_197628977.1 UDP-N-acetylmuramate dehydrogenase -
  IMF22_RS12310 (IMF22_12310) - 2831696..2832160 (-) 465 WP_197628978.1 low molecular weight protein-tyrosine-phosphatase -
  IMF22_RS12315 (IMF22_12315) kdsB 2832160..2832924 (-) 765 WP_197628980.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  IMF22_RS12320 (IMF22_12320) - 2832921..2833106 (-) 186 WP_003174668.1 Trm112 family protein -
  IMF22_RS12325 (IMF22_12325) lpxK 2833129..2834139 (-) 1011 WP_197628983.1 tetraacyldisaccharide 4'-kinase -
  IMF22_RS12330 (IMF22_12330) - 2834139..2834567 (-) 429 WP_197628986.1 ExbD/TolR family protein -
  IMF22_RS12335 (IMF22_12335) exbB 2834564..2835199 (-) 636 WP_106579832.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  IMF22_RS12340 (IMF22_12340) comA 2835309..2837534 (-) 2226 WP_197628990.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  IMF22_RS12345 (IMF22_12345) - 2837669..2838184 (+) 516 WP_159955650.1 DUF2062 domain-containing protein -
  IMF22_RS12350 (IMF22_12350) - 2838401..2841154 (+) 2754 WP_177015879.1 response regulator -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80194.06 Da        Isoelectric Point: 11.0575

>NTDB_id=492731 IMF22_RS12340 WP_197628990.1 2835309..2837534(-) (comA) [Pseudomonas poae strain PMA22]
MRTGMFALGLGLLSLRFFPALPSIGWLLAMSVVALMLLPFRTHPLAFFLLGISWACLSAQSALDDRLTPALDGQTRWVEG
RVVGLPQQTSTGVRFELTDNRSRKAQLPKRIRVSWHGGPQVNSGERWRLAVTLKRPSGLLNFHGFDYEAWLLAQRIGATG
SVKDGQRLAPARNAWRDSLRQRLSSVDAQGREAGLAALVLGDGSGLGTEDWRVLQDTGTVHLLVISGQHIGLLAGLIYGL
VAGLARYGCWPRALPWLPWACALAFAAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGVWWPLLLAFNAVLLLEPL
ASLQPGFWLSFAAVAVLVLAFSGRLGAWNWWQLWTRPQWLIAIGLFPVLLVLGLPISLSAPLANLLAVPWISFVVLPLAL
LGTALLAVPLVGPGLLWLAGGALDGLFRGLALLAGQSPAWIPAEVPLGYWWVSLTGAVLLLLPKGVPFRLLGWPMLLLAV
FPPRQLVPHGQVEVTQLDVGQGQALILRTRHHTLLYDAGPRSGAFDMGERVVVPALRKLGVEALDMMLISHAHADHAGGA
AAVARALAVKRVVGGEVEGLPALLAVQPCVSGEQWAWDGVLFELWRWPGATDSNPKSCVLRVQANGERLLLTGDIDRAAE
QAFLASALAVPTDWLQAPHHGSRSSSSGPFLERLAPKSVLISRGRGNAFGHPHPQVMQRFGALGSRVYDSAEQGAVRLQL
GAFQAPVVARSQRRFWREALL

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=492731 IMF22_RS12340 WP_197628990.1 2835309..2837534(-) (comA) [Pseudomonas poae strain PMA22]
ATGAGAACTGGGATGTTTGCCCTCGGACTTGGCCTACTGTCGCTGCGATTTTTCCCAGCGCTGCCTTCTATCGGTTGGCT
GCTGGCAATGTCGGTTGTGGCATTGATGCTGTTGCCTTTTCGTACACACCCGTTGGCGTTTTTCCTGCTGGGGATCAGTT
GGGCCTGCCTCAGCGCACAGTCGGCCCTGGATGATCGCCTTACGCCTGCACTGGATGGCCAGACGCGTTGGGTAGAGGGG
CGCGTAGTCGGGCTGCCGCAACAGACAAGCACCGGTGTACGCTTCGAGTTGACCGACAACCGCTCGCGCAAGGCTCAACT
GCCCAAGCGCATCCGCGTGTCCTGGCATGGTGGCCCGCAGGTAAACAGTGGCGAGCGTTGGCGCTTGGCGGTCACCTTGA
AGCGCCCGTCGGGGTTGCTCAATTTTCATGGCTTTGACTATGAAGCCTGGCTACTGGCCCAGCGCATTGGCGCAACCGGC
TCAGTGAAAGATGGCCAACGCCTGGCCCCGGCCCGCAACGCCTGGCGCGACAGCCTCCGGCAGCGCCTGAGCAGCGTCGA
TGCCCAGGGCCGCGAGGCGGGTTTGGCAGCGCTGGTGCTGGGCGACGGCTCGGGGCTGGGCACTGAGGACTGGCGGGTGT
TGCAAGACACCGGCACGGTGCACCTGCTGGTCATCTCGGGCCAGCACATCGGTTTGCTGGCGGGGCTGATCTACGGCTTG
GTGGCCGGGCTGGCCCGCTACGGCTGCTGGCCCCGCGCCTTGCCTTGGCTGCCATGGGCGTGCGCCCTGGCGTTTGCCGC
CGCGCTGGGCTACGGCTTATTGGCGGGGTTCGGCGTGCCGGTGCAGCGCGCGTGTGTGATGGTCGGGCTGGTTCTGCTGT
GGCGTTTGCGCTTTCGACATTTGGGCGTGTGGTGGCCGTTGTTGCTGGCATTCAATGCTGTATTGCTGCTGGAGCCATTG
GCCAGCTTGCAACCGGGCTTCTGGTTGTCGTTCGCCGCCGTCGCGGTGCTGGTGCTCGCGTTCAGCGGGCGCCTGGGCGC
CTGGAACTGGTGGCAGTTGTGGACGCGTCCCCAATGGCTGATTGCGATTGGCTTGTTTCCGGTTTTGCTGGTGCTGGGGT
TGCCGATCAGCCTGAGTGCGCCGCTGGCGAATTTATTGGCGGTGCCGTGGATCAGCTTCGTGGTGTTGCCGCTGGCATTG
CTGGGCACTGCGTTGCTGGCGGTGCCGTTGGTCGGGCCGGGCCTGTTGTGGTTGGCCGGCGGCGCGCTGGATGGGCTGTT
CAGGGGTTTGGCGCTGCTGGCAGGGCAAAGCCCGGCCTGGATACCGGCCGAGGTGCCGCTGGGTTATTGGTGGGTGAGCC
TGACCGGTGCAGTGTTATTGCTGTTGCCCAAAGGCGTGCCGTTCCGGCTGCTGGGTTGGCCGATGCTGTTGCTGGCCGTT
TTTCCACCCAGGCAACTGGTGCCGCATGGGCAGGTGGAGGTGACGCAATTGGACGTCGGCCAGGGGCAAGCGTTGATCCT
GCGCACCCGCCATCACACCTTGCTGTACGACGCCGGGCCGCGCTCGGGGGCATTTGACATGGGCGAACGTGTGGTGGTGC
CAGCCTTGAGGAAGCTCGGGGTCGAGGCGTTGGACATGATGCTGATCAGCCACGCTCACGCCGATCATGCGGGCGGTGCG
GCAGCGGTCGCCCGCGCGCTGGCGGTGAAGCGGGTCGTGGGTGGCGAGGTCGAAGGGTTGCCAGCATTGCTTGCGGTTCA
GCCGTGTGTCAGTGGTGAGCAATGGGCGTGGGATGGCGTGTTGTTCGAGTTATGGAGGTGGCCGGGTGCCACTGACAGCA
ACCCGAAATCCTGTGTGTTACGGGTCCAGGCCAATGGCGAACGCCTGCTGCTGACCGGCGACATTGATCGCGCTGCCGAG
CAGGCCTTTCTCGCGTCAGCCTTGGCCGTACCGACCGATTGGCTGCAAGCGCCGCACCATGGCAGTCGCAGCTCTTCATC
CGGGCCCTTTCTGGAGCGGCTTGCGCCCAAGTCGGTGCTGATCTCACGTGGCCGTGGCAACGCATTCGGTCACCCGCATC
CACAGGTGATGCAGCGTTTTGGGGCTTTGGGCAGCCGTGTCTACGACAGCGCCGAGCAGGGCGCCGTACGTCTGCAACTG
GGCGCCTTTCAAGCCCCGGTTGTTGCGCGCAGTCAACGCCGTTTCTGGCGCGAAGCGCTACTGTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-678)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Competence protein (Competence)

(198-461)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7M1KNC8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

61.057

97.031

0.592
  comA Ralstonia pseudosolanacearum GMI1000

35.714

100

0.385