Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   IMF22_RS12335 Genome accession   NZ_CP063073
Coordinates   2834564..2835199 (-) Length   211 a.a.
NCBI ID   WP_106579832.1    Uniprot ID   A0A7M1KNP4
Organism   Pseudomonas poae strain PMA22     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2829564..2840199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMF22_RS12300 (IMF22_12300) - 2829946..2830617 (+) 672 WP_159955664.1 Bax inhibitor-1/YccA family protein -
  IMF22_RS12305 (IMF22_12305) murB 2830680..2831699 (-) 1020 WP_197628977.1 UDP-N-acetylmuramate dehydrogenase -
  IMF22_RS12310 (IMF22_12310) - 2831696..2832160 (-) 465 WP_197628978.1 low molecular weight protein-tyrosine-phosphatase -
  IMF22_RS12315 (IMF22_12315) kdsB 2832160..2832924 (-) 765 WP_197628980.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  IMF22_RS12320 (IMF22_12320) - 2832921..2833106 (-) 186 WP_003174668.1 Trm112 family protein -
  IMF22_RS12325 (IMF22_12325) lpxK 2833129..2834139 (-) 1011 WP_197628983.1 tetraacyldisaccharide 4'-kinase -
  IMF22_RS12330 (IMF22_12330) - 2834139..2834567 (-) 429 WP_197628986.1 ExbD/TolR family protein -
  IMF22_RS12335 (IMF22_12335) exbB 2834564..2835199 (-) 636 WP_106579832.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  IMF22_RS12340 (IMF22_12340) comA 2835309..2837534 (-) 2226 WP_197628990.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  IMF22_RS12345 (IMF22_12345) - 2837669..2838184 (+) 516 WP_159955650.1 DUF2062 domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23021.17 Da        Isoelectric Point: 6.8768

>NTDB_id=492730 IMF22_RS12335 WP_106579832.1 2834564..2835199(-) (exbB) [Pseudomonas poae strain PMA22]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRITPEHLLGQVWGWIKNKQLDKDKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHEMERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDFVEGRV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=492730 IMF22_RS12335 WP_106579832.1 2834564..2835199(-) (exbB) [Pseudomonas poae strain PMA22]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCTTGAGCTCCATCGCCGCACTCGGCATCGTCGC
CGAGCGCCTCTGGACCCTGCGCGCCAGCCGCATCACCCCCGAGCATCTATTGGGGCAGGTGTGGGGCTGGATCAAGAACA
AGCAACTGGACAAAGACAAGCTCAAGGAACTGCGCGCCAATTCGCCCTTGGGTGAAATCCTCGCCGCCGGCCTCGCCAAC
TCCAAGCATGGCCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCCCGGGTCATCCATGAAATGGAGCGCTACAT
CAATGCGCTTGGCACCATCGCCGCCATGGCGCCATTGCTGGGGCTGCTGGGCACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGTTCGGGCATGACCACGAATGCGGCCGTGCTGGCCGGCGGTATCTCCAAGGCCTTGATCACCACGGCT
GCGGGCCTGATGGTCGGTATTCCCTCGGTGTTTTTCCACCGTTTCCTGCAGCGCCGCATCGACGAACTGGTGGTCGGCAT
GGAACAGGAAGCGATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGATGTCGATTTTGTCGAGGGCCGAGTGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7M1KNP4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.81

99.526

0.834