Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   IHV77_RS07845 Genome accession   NZ_CP063056
Coordinates   1655997..1656686 (-) Length   229 a.a.
NCBI ID   WP_194811430.1    Uniprot ID   -
Organism   Rodentibacter haemolyticus strain DSM 111151     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1650997..1661686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHV77_RS07815 (IHV77_07815) galE 1651326..1652342 (-) 1017 WP_194811425.1 UDP-glucose 4-epimerase GalE -
  IHV77_RS07820 (IHV77_07820) - 1652549..1653079 (-) 531 WP_194811426.1 inorganic diphosphatase -
  IHV77_RS07825 (IHV77_07825) - 1653290..1654606 (+) 1317 WP_194811427.1 NCS2 family permease -
  IHV77_RS07830 (IHV77_07830) - 1654880..1655161 (-) 282 WP_194811428.1 GNAT family N-acetyltransferase -
  IHV77_RS07835 (IHV77_07835) yacG 1655158..1655364 (-) 207 WP_194811429.1 DNA gyrase inhibitor YacG -
  IHV77_RS07840 (IHV77_07840) coaE 1655357..1655977 (-) 621 WP_194813256.1 dephospho-CoA kinase -
  IHV77_RS07845 (IHV77_07845) pilD 1655997..1656686 (-) 690 WP_194811430.1 A24 family peptidase Machinery gene
  IHV77_RS07850 (IHV77_07850) pilC 1656683..1657903 (-) 1221 WP_194811431.1 type II secretion system F family protein Machinery gene
  IHV77_RS07855 (IHV77_07855) pilB 1657905..1659281 (-) 1377 WP_194811432.1 GspE/PulE family protein Machinery gene
  IHV77_RS07860 (IHV77_07860) pilA 1659278..1659715 (-) 438 WP_194811433.1 prepilin peptidase-dependent pilin Machinery gene
  IHV77_RS07865 (IHV77_07865) ampD 1659830..1660393 (+) 564 WP_194811434.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  IHV77_RS07870 (IHV77_07870) rppH 1660911..1661379 (+) 469 Protein_1520 RNA pyrophosphohydrolase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26069.05 Da        Isoelectric Point: 9.1762

>NTDB_id=492608 IHV77_RS07845 WP_194811430.1 1655997..1656686(-) (pilD) [Rodentibacter haemolyticus strain DSM 111151]
MILFASFFLGGVFGVALWLYISGFITRLQGDIYNNYIELFPQNRPQFQPHFAAIQQKKSGHILGYFLITGLIFALITAIT
KNPLFALWLGCTIILLWTIAYLDWQYQLISPTPCLWLLALGLFGTTQSLSPLTLVQSLQSAVISFFVFYGIYQLAKWYYQ
KEALGQGDYWLALGIGSYLPAERLPLFLLIACLLGILFAILFKRKDRFLPFAPFLSVSILVVLTINYHQ

Nucleotide


Download         Length: 690 bp        

>NTDB_id=492608 IHV77_RS07845 WP_194811430.1 1655997..1656686(-) (pilD) [Rodentibacter haemolyticus strain DSM 111151]
ATGATCCTATTTGCTTCCTTTTTTCTGGGTGGAGTTTTCGGTGTAGCCTTATGGCTTTACATTTCCGGCTTTATCACAAG
ATTACAAGGCGATATCTACAATAATTACATCGAACTATTTCCTCAAAATCGTCCACAATTTCAACCGCACTTTGCGGCAA
TTCAACAAAAAAAGAGCGGTCATATTTTAGGTTATTTTCTTATCACAGGATTAATATTCGCCTTAATAACCGCAATAACA
AAAAATCCTCTTTTCGCTTTATGGCTTGGTTGCACCATTATTCTATTGTGGACGATTGCCTACCTTGATTGGCAATATCA
ACTCATTTCCCCCACACCTTGTTTATGGTTACTTGCCCTTGGCTTATTCGGTACAACACAATCTTTATCACCTTTAACCC
TAGTGCAAAGCCTACAAAGTGCGGTCATTTCTTTCTTTGTTTTTTATGGCATTTATCAACTCGCTAAATGGTATTATCAA
AAAGAAGCCCTTGGACAAGGGGATTATTGGTTAGCCCTTGGCATAGGCAGTTACCTACCGGCGGAACGTCTCCCCCTCTT
TCTTTTAATTGCCTGCTTATTAGGCATTTTATTTGCAATTCTTTTCAAAAGAAAAGATCGTTTTTTACCCTTTGCACCTT
TTTTGAGTGTCTCGATTCTTGTAGTATTGACCATCAATTATCACCAATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(93-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Haemophilus influenzae Rd KW20

57.456

99.563

0.572
  pilD Haemophilus influenzae 86-028NP

56.14

99.563

0.559